Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004968A_C01 KMC004968A_c01
(708 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178080.1| leucine-rich repeat transmembrane protein kinas... 140 1e-36
dbj|BAC42504.1| unknown protein [Arabidopsis thaliana] 140 1e-36
dbj|BAB64823.1| putative receptor protein kinase [Oryza sativa (... 139 4e-35
dbj|BAC41801.1| putative receptor protein kinase [Arabidopsis th... 112 4e-24
ref|NP_199787.1| receptor protein kinase-like; protein id: At5g4... 112 4e-24
>ref|NP_178080.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g79620.1 [Arabidopsis thaliana]
gi|7715608|gb|AAF68126.1|AC010793_21 F20B17.5
[Arabidopsis thaliana]
Length = 980
Score = 140 bits (353), Expect(2) = 1e-36
Identities = 69/115 (60%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Frame = -2
Query: 707 VYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDPVVRNTPNLIGFG 528
VYSFGVVM+ELIT++QPIEKGKYIVRE++ +MNK D++ YGLR+ MD +R+ L G
Sbjct: 831 VYSFGVVMMELITAKQPIEKGKYIVREIKLVMNKSDDDFYGLRDKMDRSLRDVGTLPELG 890
Query: 527 RFLELAMQCVEDSASDRPTMSEVVKAFETMLQNDGVNTNST-SASSSATDFWELL 366
R++ELA++CV+++A +RPTMSEVVK E ++QN G +++S+ SASSSATDF E L
Sbjct: 891 RYMELALKCVDETADERPTMSEVVKEIEIIIQNSGASSSSSASASSSATDFGEKL 945
Score = 35.4 bits (80), Expect(2) = 1e-36
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = -1
Query: 315 DSNNAFDYSGGYTPSTKVEPK 253
D AFDYSGGY+ TK+EPK
Sbjct: 960 DGGGAFDYSGGYSVPTKIEPK 980
>dbj|BAC42504.1| unknown protein [Arabidopsis thaliana]
Length = 971
Score = 140 bits (353), Expect(2) = 1e-36
Identities = 69/115 (60%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Frame = -2
Query: 707 VYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDPVVRNTPNLIGFG 528
VYSFGVVM+ELIT++QPIEKGKYIVRE++ +MNK D++ YGLR+ MD +R+ L G
Sbjct: 822 VYSFGVVMMELITAKQPIEKGKYIVREIKLVMNKSDDDFYGLRDKMDRSLRDVGTLPELG 881
Query: 527 RFLELAMQCVEDSASDRPTMSEVVKAFETMLQNDGVNTNST-SASSSATDFWELL 366
R++ELA++CV+++A +RPTMSEVVK E ++QN G +++S+ SASSSATDF E L
Sbjct: 882 RYMELALKCVDETADERPTMSEVVKEIEIIIQNSGASSSSSASASSSATDFGEKL 936
Score = 35.4 bits (80), Expect(2) = 1e-36
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = -1
Query: 315 DSNNAFDYSGGYTPSTKVEPK 253
D AFDYSGGY+ TK+EPK
Sbjct: 951 DGGGAFDYSGGYSVPTKIEPK 971
>dbj|BAB64823.1| putative receptor protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 856
Score = 139 bits (351), Expect(2) = 4e-35
Identities = 67/110 (60%), Positives = 90/110 (80%)
Frame = -2
Query: 707 VYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDPVVRNTPNLIGFG 528
VYSFGVVMLELITSRQPIEKG YIVRE+RT +++ D+E+YGL+ L+DP +R++ ++GF
Sbjct: 708 VYSFGVVMLELITSRQPIEKGTYIVREIRTAIDQYDQEYYGLKSLIDPTIRDSAKMVGFR 767
Query: 527 RFLELAMQCVEDSASDRPTMSEVVKAFETMLQNDGVNTNSTSASSSATDF 378
RF++LAM+CVE+SA+DRPTM++VVK E ++QN+G SAS SA F
Sbjct: 768 RFVQLAMECVEESAADRPTMNDVVKELEIIIQNEGAQL-LNSASLSAQQF 816
Score = 30.8 bits (68), Expect(2) = 4e-35
Identities = 18/41 (43%), Positives = 23/41 (55%)
Frame = -1
Query: 375 GVTKGAMKHPYIDATRDNVNDSNNAFDYSGGYTPSTKVEPK 253
G KG PY D N + S++AFDY+ Y+ S VEPK
Sbjct: 817 GYAKGRDPDPYGDHVPINDDSSSSAFDYNSVYSYSV-VEPK 856
>dbj|BAC41801.1| putative receptor protein kinase [Arabidopsis thaliana]
Length = 953
Score = 112 bits (281), Expect = 4e-24
Identities = 57/109 (52%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Frame = -2
Query: 707 VYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDP-VVRNTPNLIGF 531
VY FGVV+LEL+T R PIE+GKY+VREV+T MNK Y L+EL+D ++ ++ NL GF
Sbjct: 815 VYGFGVVLLELLTGRSPIERGKYVVREVKTKMNKS-RSLYDLQELLDTTIIASSGNLKGF 873
Query: 530 GRFLELAMQCVEDSASDRPTMSEVVKAFETMLQNDGVNTNSTSASSSAT 384
++++LA++CVE+ +RP+M EVVK E ++Q G+N NS SA+SS T
Sbjct: 874 EKYVDLALRCVEEEGVNRPSMGEVVKEIENIMQLAGLNPNSDSATSSRT 922
>ref|NP_199787.1| receptor protein kinase-like; protein id: At5g49760.1 [Arabidopsis
thaliana] gi|8978273|dbj|BAA98164.1| receptor protein
kinase-like [Arabidopsis thaliana]
Length = 941
Score = 112 bits (281), Expect = 4e-24
Identities = 57/109 (52%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Frame = -2
Query: 707 VYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDP-VVRNTPNLIGF 531
VY FGVV+LEL+T R PIE+GKY+VREV+T MNK Y L+EL+D ++ ++ NL GF
Sbjct: 790 VYGFGVVLLELLTGRSPIERGKYVVREVKTKMNKS-RSLYDLQELLDTTIIASSGNLKGF 848
Query: 530 GRFLELAMQCVEDSASDRPTMSEVVKAFETMLQNDGVNTNSTSASSSAT 384
++++LA++CVE+ +RP+M EVVK E ++Q G+N NS SA+SS T
Sbjct: 849 EKYVDLALRCVEEEGVNRPSMGEVVKEIENIMQLAGLNPNSDSATSSRT 897
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,497,389
Number of Sequences: 1393205
Number of extensions: 11971357
Number of successful extensions: 32505
Number of sequences better than 10.0: 1353
Number of HSP's better than 10.0 without gapping: 30250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31548
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
