Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004965A_C01 KMC004965A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172012.1| putative ligand-gated ion channel protein; prot... 84 1e-15
pir||T51137 ionotropic glutamate receptor homolog GLR4 [imported... 84 1e-15
pir||D86186 hypothetical protein [imported] - Arabidopsis thalia... 84 1e-15
gb|AAL61999.1| putative glutamate receptor protein GLR3.4b [Arab... 84 1e-15
pir||T51135 ligand-gated channel-like protein precursor [importe... 82 4e-15
>ref|NP_172012.1| putative ligand-gated ion channel protein; protein id: At1g05200.1,
supported by cDNA: gi_5713180 [Arabidopsis thaliana]
Length = 948
Score = 83.6 bits (205), Expect = 1e-15
Identities = 50/101 (49%), Positives = 60/101 (58%), Gaps = 6/101 (5%)
Frame = -2
Query: 487 LTSFWGLFTICGIACVLALIVFSARVCCQYNKSLKSEEDDEEI----QPTSSRRTSRTSS 320
L SFWGLF ICGI C +AL VF RV QY + L D+E +P+ S R SR S
Sbjct: 844 LKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSRAPS 903
Query: 319 FKDLIVFADKKETEIKEILRQ--SKKRRHSNSLDLQSISTH 203
FK+LI DK+E EIKEIL+Q SKK + + S S S H
Sbjct: 904 FKELIKVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQSQH 944
>pir||T51137 ionotropic glutamate receptor homolog GLR4 [imported] - Arabidopsis
thaliana
Length = 976
Score = 83.6 bits (205), Expect = 1e-15
Identities = 50/101 (49%), Positives = 60/101 (58%), Gaps = 6/101 (5%)
Frame = -2
Query: 487 LTSFWGLFTICGIACVLALIVFSARVCCQYNKSLKSEEDDEEI----QPTSSRRTSRTSS 320
L SFWGLF ICGI C +AL VF RV QY + L D+E +P+ S R SR S
Sbjct: 872 LKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSRAPS 931
Query: 319 FKDLIVFADKKETEIKEILRQ--SKKRRHSNSLDLQSISTH 203
FK+LI DK+E EIKEIL+Q SKK + + S S S H
Sbjct: 932 FKELIKVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQSQH 972
>pir||D86186 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388577|gb|AAB71458.1| Similar to Arabidopsis putative
ion-channel PID:g2262157 (gb|AC002329). [Arabidopsis
thaliana]
Length = 962
Score = 83.6 bits (205), Expect = 1e-15
Identities = 50/101 (49%), Positives = 60/101 (58%), Gaps = 6/101 (5%)
Frame = -2
Query: 487 LTSFWGLFTICGIACVLALIVFSARVCCQYNKSLKSEEDDEEI----QPTSSRRTSRTSS 320
L SFWGLF ICGI C +AL VF RV QY + L D+E +P+ S R SR S
Sbjct: 858 LKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSRAPS 917
Query: 319 FKDLIVFADKKETEIKEILRQ--SKKRRHSNSLDLQSISTH 203
FK+LI DK+E EIKEIL+Q SKK + + S S S H
Sbjct: 918 FKELIKVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQSQH 958
>gb|AAL61999.1| putative glutamate receptor protein GLR3.4b [Arabidopsis thaliana]
Length = 959
Score = 83.6 bits (205), Expect = 1e-15
Identities = 50/101 (49%), Positives = 60/101 (58%), Gaps = 6/101 (5%)
Frame = -2
Query: 487 LTSFWGLFTICGIACVLALIVFSARVCCQYNKSLKSEEDDEEI----QPTSSRRTSRTSS 320
L SFWGLF ICGI C +AL VF RV QY + L D+E +P+ S R SR S
Sbjct: 855 LKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSRAPS 914
Query: 319 FKDLIVFADKKETEIKEILRQ--SKKRRHSNSLDLQSISTH 203
FK+LI DK+E EIKEIL+Q SKK + + S S S H
Sbjct: 915 FKELIKVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQSQH 955
>pir||T51135 ligand-gated channel-like protein precursor [imported] - Arabidopsis
thaliana gi|5713181|gb|AAD47833.1|AF167355_1 ligand-gated
channel-like protein precursor [Arabidopsis thaliana]
Length = 941
Score = 81.6 bits (200), Expect = 4e-15
Identities = 47/92 (51%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Frame = -2
Query: 487 LTSFWGLFTICGIACVLALIVFSARVCCQYNKSLKSEEDDEE----IQPTSSRRTSRTSS 320
L SFWGLF ICGI C +AL VF RV QY + L D+E +P+ S R SR S
Sbjct: 844 LKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERPGEVSEPSRSGRGSRAPS 903
Query: 319 FKDLIVFADKKETEIKEILRQ--SKKRRHSNS 230
FK+LI DK+E EIKEIL+Q SKK + + S
Sbjct: 904 FKELIKVVDKREAEIKEILKQKSSKKLKSTQS 935
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,286,877
Number of Sequences: 1393205
Number of extensions: 7397037
Number of successful extensions: 25248
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 24052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25205
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
