Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004960A_C01 KMC004960A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD46410.1|AF096260_1 ER66 protein [Lycopersicon esculentum] 124 1e-27
gb|AAG39222.1|AF253511_1 anther ethylene-upregulated protein ER1... 118 8e-26
ref|NP_201227.2| calmodulin-binding protein; protein id: At5g642... 117 2e-25
gb|AAM10969.1| calmodulin-binding transcription activator [Brass... 103 3e-21
ref|NP_196503.1| calmodulin-binding protein; protein id: At5g094... 101 1e-20
>gb|AAD46410.1|AF096260_1 ER66 protein [Lycopersicon esculentum]
Length = 558
Score = 124 bits (312), Expect = 1e-27
Identities = 68/111 (61%), Positives = 81/111 (72%), Gaps = 3/111 (2%)
Frame = -3
Query: 757 GFRPDAPNE---LQEQPGPSNSEEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQ 587
GF+P+AP E +Q+QP +EDDYDFLKEGRKQ+E R QKAL RVKSMVQYPEAR Q
Sbjct: 453 GFKPEAPTEGSNMQDQP----VQEDDYDFLKEGRKQTEERLQKALERVKSMVQYPEARDQ 508
Query: 586 YRRVLNIVEDFRRTQQESNQNSINSEEAVDGLEDLIDIDMLLDDDNFIPLA 434
YRR+LN+V D + + S S NS EAVD +DLID+ LLDDD F+P A
Sbjct: 509 YRRLLNVVSDMQ--EPNSTAASYNSAEAVDFNDDLIDLGDLLDDDTFMPTA 557
>gb|AAG39222.1|AF253511_1 anther ethylene-upregulated protein ER1 [Nicotiana tabacum]
Length = 672
Score = 118 bits (296), Expect = 8e-26
Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 4/112 (3%)
Frame = -3
Query: 757 GFRPDAP----NELQEQPGPSNSEEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARA 590
GF+P+A + +Q++P +EDDYDFLKEGRKQ+E R QKAL+RVKSMVQYPEAR
Sbjct: 564 GFKPEATLTEGSNMQDRP----VQEDDYDFLKEGRKQTEQRLQKALARVKSMVQYPEARD 619
Query: 589 QYRRVLNIVEDFRRTQQESNQNSINSEEAVDGLEDLIDIDMLLDDDNFIPLA 434
QYRR+LN+V D + T S+ NS EA D +DLID+D LLDDD F+ A
Sbjct: 620 QYRRLLNVVSDMKDTTTTSDGAPSNSGEAADFGDDLIDLDDLLDDDTFMSTA 671
>ref|NP_201227.2| calmodulin-binding protein; protein id: At5g64220.1 [Arabidopsis
thaliana]
Length = 1076
Score = 117 bits (292), Expect = 2e-25
Identities = 66/113 (58%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
Frame = -3
Query: 757 GFRPDAPNELQEQPGPSNSEEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRR 578
GF+ D ++ E P+ +EDDYDFLKEGRKQ+E R QKAL+RVKSM QYPEARAQYRR
Sbjct: 965 GFKRDTISKPTEPVCPA-PQEDDYDFLKEGRKQTEERLQKALTRVKSMAQYPEARAQYRR 1023
Query: 577 VLNIVEDFRRTQQESNQN-SINSEEAVDGLE--DLIDIDMLLDDDNFIPLAFD 428
+L +VE FR + S+ N+EEA + E DLIDID LLDDD F+ LAF+
Sbjct: 1024 LLTVVEGFRENEASSSSALKNNTEEAANYNEEDDLIDIDSLLDDDTFMSLAFE 1076
>gb|AAM10969.1| calmodulin-binding transcription activator [Brassica napus]
Length = 1035
Score = 103 bits (256), Expect = 3e-21
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Frame = -3
Query: 757 GFRPDA-PNELQEQPG-PSNSEEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQY 584
GF+ +A P ++ +P P +E DYDFL++GRKQ+E R QKAL+RVKSMVQYPEAR QY
Sbjct: 897 GFKRNAVPKTVEPEPQCPMIPKEGDYDFLEKGRKQTEERLQKALTRVKSMVQYPEARDQY 956
Query: 583 RRVLNIVEDFRRTQQESNQNSINSEEAVD-GLEDLIDIDMLLDDD 452
RR+L +VE FR + S+ + N EE V+ +DLIDID LL+DD
Sbjct: 957 RRLLTVVEGFRENEASSSLSVNNREEPVNCEDDDLIDIDSLLNDD 1001
>ref|NP_196503.1| calmodulin-binding protein; protein id: At5g09410.1 [Arabidopsis
thaliana] gi|9955528|emb|CAC05467.1| putative protein
[Arabidopsis thaliana]
Length = 1007
Score = 101 bits (251), Expect = 1e-20
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = -3
Query: 712 PSNSEEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNIVEDFRRTQQES 533
P +ED+YD+LKEGRKQ+E R QKAL+RVKSMVQYPEAR QYRR+L +VE FR + S
Sbjct: 911 PRIPQEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVVEGFRENEASS 970
Query: 532 NQNSINSEEAVDGLE--DLIDIDMLLDDDNFI 443
+ + N EE E D IDI+ LL+DD +
Sbjct: 971 SASINNKEEEAVNCEEDDFIDIESLLNDDTLM 1002
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,452,649
Number of Sequences: 1393205
Number of extensions: 15932841
Number of successful extensions: 43238
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43044
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
