Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004957A_C01 KMC004957A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_504808.1| Predicted CDS, serpentine receptor Sre, putativ... 35 0.84
emb|CAB89588.2| hypothetical protein L1232.06 [Leishmania major] 34 1.4
pir||S52053 cytochrome-c oxidase (EC 1.9.3.1) chain I - Trypanop... 32 5.4
gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans] 32 7.1
>ref|NP_504808.1| Predicted CDS, serpentine receptor Sre, putative G protein-coupled
chemoreceptor family member [Caenorhabditis elegans]
gi|7498815|pir||T28717 hypothetical protein F10D2.3 -
Caenorhabditis elegans gi|2384821|gb|AAC48234.1|
Hypothetical protein F10D2.3 [Caenorhabditis elegans]
Length = 495
Score = 34.7 bits (78), Expect = 0.84
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Frame = -2
Query: 305 TLTL*EACLYLLKCTHFFCLCSRSMTAYLVCPFVAIPCT*FKDNVRSIVSLLFVSVSLVY 126
T+ + AC + CT FFC R +C ++ R +S++ S+ ++
Sbjct: 102 TMNITIACTFAAMCTLFFCAVERCFATVYICD--------YEKKQRKFISIMLNSMLTIF 153
Query: 125 FF-----------SSYLISFYV*YGGKEIVVFMYKSYLNRSCYT-LSIHIYL 6
F + YLI F + G +++ + +LN+ Y L ++Y+
Sbjct: 154 GFAVCGVVTDKKNTVYLIIFLLVIDGIALMLHCFLQWLNKRIYVRLHDNVYI 205
>emb|CAB89588.2| hypothetical protein L1232.06 [Leishmania major]
Length = 907
Score = 33.9 bits (76), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -1
Query: 228 CLPCMPVCSNPLYIV*RQCKIYCKLTLCFCFTCIFLF*LFDFLLCLIW 85
CLPC+P+ ++ R +I + LC T IFL L L+CL W
Sbjct: 31 CLPCLPLRWKSVHATSRTRRILMGILLCLITTLIFLIGL---LVCLTW 75
>pir||S52053 cytochrome-c oxidase (EC 1.9.3.1) chain I - Trypanoplasma borreli
mitochondrion gi|563140|gb|AAA73454.1| cytochrome c
oxidase subunit 1
Length = 546
Score = 32.0 bits (71), Expect = 5.4
Identities = 32/124 (25%), Positives = 55/124 (43%), Gaps = 4/124 (3%)
Frame = -1
Query: 417 WIKLLXVVFNKLHMSLIVVMFDSCNLI*WALFVI-VNTDSNTLGSLFISIKMYTFLLSLF 241
WI L +F L ++V+F N++ + L + + + + I+ +Y+FL+ LF
Sbjct: 401 WIPLEFFIF--LVYYNLIVLFLGSNILFYPLHSLGLYSFPRRISDYPINFLLYSFLM-LF 457
Query: 240 *VHDCLPCMPVCSNPLYIV*RQCKIYCKLTL---CFCFTCIFLF*LFDFLLCLIWWQGNC 70
V L + C C ++ L CF CIFL LF F IW+ +C
Sbjct: 458 GVIFLLCLVLFC----------CCLFSVLLFWDCCFFLCCIFLCCLFSFFCFFIWFPLSC 507
Query: 69 CIHV 58
+++
Sbjct: 508 VLYL 511
>gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans]
Length = 212
Score = 31.6 bits (70), Expect = 7.1
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -1
Query: 360 MFDSCNLI*WALFVIVNTDSNTLGSLFISIKMYTFLLSLF*VHDCLPCMPVCSNPLYIV* 181
M+ SC L W LF + D L +F+++ ++ F+L F V + N
Sbjct: 1 MYLSCFL--WFLFGFYSKD---LVLIFLALCVFLFVLEFFFVVFLFVFITFWYN------ 49
Query: 180 RQCKIYCKLTLCFCFTCI----FLF*LFDFLLCLIW 85
+ LCF F C LF LFDF LCL++
Sbjct: 50 ----YFLLFFLCFLFKCFVLLDLLFLLFDFELCLLY 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,788,974
Number of Sequences: 1393205
Number of extensions: 8431456
Number of successful extensions: 17078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17073
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
