Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004952A_C01 KMC004952A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_220362.1| ATP-dependent zinc protease [Chlamydia trachoma... 28 2.9
ref|XP_170883.1| hypothetical protein XP_170883 [Homo sapiens] 30 3.3
ref|NP_683431.1| similar to extensin-like protein; protein id: A... 27 3.4
pir||T18289 racGAP protein - slime mold (Dictyostelium discoideu... 33 3.4
ref|NP_651275.1| CG5794-PA [Drosophila melanogaster] gi|23172191... 33 3.4
>ref|NP_220362.1| ATP-dependent zinc protease [Chlamydia trachomatis]
gi|7468888|pir||D71463 probable ATP-dependent zinc
proteinase - Chlamydia trachomatis (serotype D, strain
UW3/Cx) gi|3329313|gb|AAC68438.1| ATP-dependent zinc
protease [Chlamydia trachomatis]
Length = 913
Score = 28.1 bits (61), Expect(2) = 2.9
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +3
Query: 174 TWTKIKLQLTL*ELNMLEASSSQNHPPPPPQ 266
+W K Q + E ML S++ PPPPPQ
Sbjct: 868 SWDADKKQARMKEEGMLYKKISEDLPPPPPQ 898
Score = 23.5 bits (49), Expect(2) = 2.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 250 PPPPPNFSLSSGTKL 294
PPPPP ++ GT L
Sbjct: 893 PPPPPQENVQDGTSL 907
>ref|XP_170883.1| hypothetical protein XP_170883 [Homo sapiens]
Length = 209
Score = 29.6 bits (65), Expect(2) = 3.3
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
Frame = +1
Query: 199 LHCKNSTCLKLQVLR-----ITPPPPP 264
LHC+ S C +L+ +R +TPPPPP
Sbjct: 112 LHCQLSRCRRLRGVRRAPAPLTPPPPP 138
Score = 21.9 bits (45), Expect(2) = 3.3
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +2
Query: 245 SPPPPPPISLSL 280
+PPPPPP S L
Sbjct: 133 TPPPPPPPSRCL 144
>ref|NP_683431.1| similar to extensin-like protein; protein id: At1g54215.1
[Arabidopsis thaliana]
Length = 169
Score = 26.6 bits (57), Expect(2) = 3.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 248 PPPPPPISLSLVVQNWVTKAQPIIT 322
PPPPPP ++++ V+ + P +T
Sbjct: 58 PPPPPPPAVNMSVETGIPPPPPPVT 82
Score = 25.0 bits (53), Expect(2) = 3.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 236 FSESPPPPPP 265
F +SPPPPPP
Sbjct: 38 FPQSPPPPPP 47
>pir||T18289 racGAP protein - slime mold (Dictyostelium discoideum)
gi|2190355|emb|CAA71241.1| racGAP [Dictyostelium
discoideum]
Length = 1335
Score = 32.7 bits (73), Expect = 3.4
Identities = 20/46 (43%), Positives = 24/46 (51%), Gaps = 5/46 (10%)
Frame = +2
Query: 236 FSESPPPPPPISL-SLVVQNWVTKAQ----PIITPTKNMGKLRRQN 358
F +SPPPPPP+S+ +QN Q PI TPTK R N
Sbjct: 601 FLDSPPPPPPLSIPPTPLQNIPPPLQNIPPPITTPTKTTTTTVRSN 646
>ref|NP_651275.1| CG5794-PA [Drosophila melanogaster] gi|23172191|gb|AAF56319.2|
CG5794-PA [Drosophila melanogaster]
Length = 3912
Score = 32.7 bits (73), Expect = 3.4
Identities = 26/79 (32%), Positives = 42/79 (52%), Gaps = 2/79 (2%)
Frame = +2
Query: 239 SESPPPPPP-ISLSLVVQNWVTKAQPIITPTKNMGKLRRQNEDKKESSISKG*K-SFPCT 412
+E PPPPPP + +S + + + + +TPT + G Q+ + + SS S G K + P
Sbjct: 1523 NEQPPPPPPEVKMS---KEQLCELEAPLTPTPSTG---LQDVETEASSSSGGDKENQPKQ 1576
Query: 413 FSNRKHHQMIFRRLEERPV 469
S R+ F + +ERPV
Sbjct: 1577 HSKRQKKGETFEQEKERPV 1595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,942,355
Number of Sequences: 1393205
Number of extensions: 11545369
Number of successful extensions: 54512
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 34410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50508
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
