Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004947A_C01 KMC004947A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566540.1| expressed protein; protein id: At3g16270.1, sup... 116 2e-25
ref|NP_683381.1| expressed protein, 5' partial; protein id: At1g... 116 2e-25
dbj|BAB01267.1| gb|AAB63649.1~gene_id:MYA6.8~strong similarity t... 102 3e-21
gb|AAB63649.1| hypothetical protein [Arabidopsis thaliana] 99 5e-20
dbj|BAA93000.1| unnamed protein product [Oryza sativa (japonica ... 61 1e-08
>ref|NP_566540.1| expressed protein; protein id: At3g16270.1, supported by cDNA:
gi_13430665 [Arabidopsis thaliana]
gi|13430666|gb|AAK25955.1|AF360245_1 unknown protein
[Arabidopsis thaliana] gi|14532838|gb|AAK64101.1|
unknown protein [Arabidopsis thaliana]
Length = 690
Score = 116 bits (290), Expect = 2e-25
Identities = 58/106 (54%), Positives = 76/106 (70%), Gaps = 3/106 (2%)
Frame = -1
Query: 575 GVMLNHPYTSQPLNYGAMGTLLAQQQ-FLATMANFQHLSNVNMRDDGVAQIAGPNG--RT 405
G+M+N + SQPLNY AM +LLAQQQ +L M+NFQ N+N + G G +G ++
Sbjct: 584 GMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSGGNQS 643
Query: 404 PIPDIFQPGFSPQTPSSMINSSKKEDTKAFDFISDHLASSRDSRRV 267
+PDIFQP F Q P+S +N SKKEDT+AFDFISDHL S+RD++RV
Sbjct: 644 ALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHLTSARDTKRV 689
>ref|NP_683381.1| expressed protein, 5' partial; protein id: At1g45192.1 [Arabidopsis
thaliana]
Length = 217
Score = 116 bits (290), Expect = 2e-25
Identities = 58/106 (54%), Positives = 76/106 (70%), Gaps = 3/106 (2%)
Frame = -1
Query: 575 GVMLNHPYTSQPLNYGAMGTLLAQQQ-FLATMANFQHLSNVNMRDDGVAQIAGPNG--RT 405
G+M+N + SQPLNY AM +LLAQQQ +L M+NFQ N+N + G G +G ++
Sbjct: 111 GMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSGGNQS 170
Query: 404 PIPDIFQPGFSPQTPSSMINSSKKEDTKAFDFISDHLASSRDSRRV 267
+PDIFQP F Q P+S +N SKKEDT+AFDFISDHL S+RD++RV
Sbjct: 171 ALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHLTSARDTKRV 216
>dbj|BAB01267.1| gb|AAB63649.1~gene_id:MYA6.8~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 714
Score = 102 bits (255), Expect = 3e-21
Identities = 58/130 (44%), Positives = 76/130 (57%), Gaps = 27/130 (20%)
Frame = -1
Query: 575 GVMLNHPYTSQPLNYGAMGTLLAQQQ-FLATMANFQHLSNVNMRDDGVAQIAGPNG--RT 405
G+M+N + SQPLNY AM +LLAQQQ +L M+NFQ N+N + G G +G ++
Sbjct: 584 GMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSGGNQS 643
Query: 404 PIPDIFQPGFSPQTPSSMINSSKKEDTKAFDFIS------------------------DH 297
+PDIFQP F Q P+S +N SKKEDT+AFDFIS DH
Sbjct: 644 ALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISVSFAILLLIFDSKVWSICHLSLYMDH 703
Query: 296 LASSRDSRRV 267
L S+RD++RV
Sbjct: 704 LTSARDTKRV 713
>gb|AAB63649.1| hypothetical protein [Arabidopsis thaliana]
Length = 701
Score = 98.6 bits (244), Expect = 5e-20
Identities = 50/94 (53%), Positives = 65/94 (68%), Gaps = 3/94 (3%)
Frame = -1
Query: 575 GVMLNHPYTSQPLNYGAMGTLLAQQQ-FLATMANFQHLSNVNMRDDGVAQIAGPNG--RT 405
G+M+N + SQPLNY AM +LLAQQQ +L M+NFQ N+N + G G +G ++
Sbjct: 584 GMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSGGNQS 643
Query: 404 PIPDIFQPGFSPQTPSSMINSSKKEDTKAFDFIS 303
+PDIFQP F Q P+S +N SKKEDT+AFDFIS
Sbjct: 644 ALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFIS 677
>dbj|BAA93000.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 719
Score = 60.8 bits (146), Expect = 1e-08
Identities = 40/94 (42%), Positives = 53/94 (55%), Gaps = 4/94 (4%)
Frame = -1
Query: 572 VMLNHPYTSQPLNYGAMGTLLA-QQQFLATMANFQ---HLSNVNMRDDGVAQIAGPNGRT 405
++LN + Q LNYGAM LLA QQQ L + NF S++N + G A +
Sbjct: 598 MLLNPAFAGQQLNYGAMSVLLAQQQQLLQNLGNFNAGLGHSSLNAMNSGNASV------- 650
Query: 404 PIPDIFQPGFSPQTPSSMINSSKKEDTKAFDFIS 303
+PDIF PQ + M N SKK++TKAFDF+S
Sbjct: 651 -LPDIFNSSNQPQHVAVMSN-SKKDETKAFDFVS 682
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,028,816
Number of Sequences: 1393205
Number of extensions: 9837736
Number of successful extensions: 25082
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25057
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
