Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004944A_C01 KMC004944A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog ... 46 3e-07
sp|P37384|DMC1_LILLO Meiotic recombination protein DMC1 homolog ... 44 7e-07
sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog ... 45 9e-07
pir||JC4092 DMC1/LIM15 homolog - Arabidopsis thaliana gi|871832|... 45 1e-06
ref|NP_188928.1| meiotic recombination protein (AtDMC1); protein... 45 1e-06
>sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog gi|7448302|pir||T08838
RecA/Rad51/DMC1-like protein - soybean
gi|1518157|gb|AAB07025.1| RecA/Rad51/DMC1-like protein
Length = 345
Score = 45.8 bits (107), Expect(2) = 3e-07
Identities = 25/35 (71%), Positives = 26/35 (73%)
Frame = -2
Query: 656 ESLQRQSKLAPMLS*LIKIAAEFNVAVYMTNPEIN 552
E RQ KLA MLS LIKIA EFNVAVYMTN I+
Sbjct: 244 ELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIS 278
Score = 30.8 bits (68), Expect(2) = 3e-07
Identities = 14/17 (82%), Positives = 16/17 (93%)
Frame = -1
Query: 696 SVVALYRVDFSVRGELA 646
SV+AL+RVDFS RGELA
Sbjct: 230 SVIALFRVDFSGRGELA 246
>sp|P37384|DMC1_LILLO Meiotic recombination protein DMC1 homolog gi|629874|pir||JC2214
hypothetical 38.3K protein, LIM15 - trumpet lily
gi|431168|dbj|BAA04845.1| RAD51-like protein [Lilium
longiflorum]
Length = 349
Score = 44.3 bits (103), Expect(2) = 7e-07
Identities = 24/34 (70%), Positives = 25/34 (72%)
Frame = -2
Query: 656 ESLQRQSKLAPMLS*LIKIAAEFNVAVYMTNPEI 555
E +RQ KLA MLS L KIA EFNVAVYMTN I
Sbjct: 248 ELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVI 281
Score = 30.8 bits (68), Expect(2) = 7e-07
Identities = 14/17 (82%), Positives = 16/17 (93%)
Frame = -1
Query: 696 SVVALYRVDFSVRGELA 646
SV+AL+RVDFS RGELA
Sbjct: 234 SVIALFRVDFSGRGELA 250
>sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog
gi|1790922|gb|AAC49617.1| AtDMC1 [Arabidopsis thaliana]
Length = 344
Score = 45.4 bits (106), Expect(2) = 9e-07
Identities = 25/34 (73%), Positives = 25/34 (73%)
Frame = -2
Query: 656 ESLQRQSKLAPMLS*LIKIAAEFNVAVYMTNPEI 555
E RQ KLA MLS LIKIA EFNVAVYMTN I
Sbjct: 243 ELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVI 276
Score = 29.3 bits (64), Expect(2) = 9e-07
Identities = 12/17 (70%), Positives = 16/17 (93%)
Frame = -1
Query: 696 SVVALYRVDFSVRGELA 646
S++AL+RVDF+ RGELA
Sbjct: 229 SIIALFRVDFTGRGELA 245
>pir||JC4092 DMC1/LIM15 homolog - Arabidopsis thaliana gi|871832|dbj|BAA08255.1|
recA-like protein [Arabidopsis thaliana]
Length = 342
Score = 45.4 bits (106), Expect(2) = 1e-06
Identities = 25/34 (73%), Positives = 25/34 (73%)
Frame = -2
Query: 656 ESLQRQSKLAPMLS*LIKIAAEFNVAVYMTNPEI 555
E RQ KLA MLS LIKIA EFNVAVYMTN I
Sbjct: 243 ELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVI 276
Score = 29.3 bits (64), Expect(2) = 1e-06
Identities = 12/17 (70%), Positives = 16/17 (93%)
Frame = -1
Query: 696 SVVALYRVDFSVRGELA 646
S++AL+RVDF+ RGELA
Sbjct: 229 SIIALFRVDFTGRGELA 245
>ref|NP_188928.1| meiotic recombination protein (AtDMC1); protein id: At3g22880.1
[Arabidopsis thaliana]
Length = 339
Score = 45.4 bits (106), Expect(2) = 1e-06
Identities = 25/34 (73%), Positives = 25/34 (73%)
Frame = -2
Query: 656 ESLQRQSKLAPMLS*LIKIAAEFNVAVYMTNPEI 555
E RQ KLA MLS LIKIA EFNVAVYMTN I
Sbjct: 243 ELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVI 276
Score = 29.3 bits (64), Expect(2) = 1e-06
Identities = 12/17 (70%), Positives = 16/17 (93%)
Frame = -1
Query: 696 SVVALYRVDFSVRGELA 646
S++AL+RVDF+ RGELA
Sbjct: 229 SIIALFRVDFTGRGELA 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,341,188
Number of Sequences: 1393205
Number of extensions: 11306484
Number of successful extensions: 27210
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 26370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27207
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
