Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004937A_C01 KMC004937A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172572.1| Ser/Thr protein kinase isolog; protein id: At1g... 37 0.19
gb|AAM20520.1| serine/threonine protein kinase isolog [Arabidops... 37 0.19
gb|AAD25737.1|AF100324_5 IS1630 transposase [Mycoplasma fermentans] 32 6.1
ref|NP_047500.1| LEF-5=AcMNPV orf99 [Bombyx mori nuclear polyhed... 32 6.1
ref|NP_701640.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.1
>ref|NP_172572.1| Ser/Thr protein kinase isolog; protein id: At1g11050.1, supported
by cDNA: gi_20466405 [Arabidopsis thaliana]
gi|25402722|pir||D86244 protein Ser/Thr protein kinase
homolog [imported] - Arabidopsis thaliana
gi|1931642|gb|AAB65477.1| Ser/Thr protein kinase isolog;
46094-44217 [Arabidopsis thaliana]
Length = 625
Score = 36.6 bits (83), Expect = 0.19
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -3
Query: 527 DGNTFSISPALSGPKLQAGDMLR 459
DGN F+ISPALSG ++ +GDMLR
Sbjct: 603 DGNGFTISPALSGLQIHSGDMLR 625
>gb|AAM20520.1| serine/threonine protein kinase isolog [Arabidopsis thaliana]
gi|28059623|gb|AAO30076.1| serine/threonine protein
kinase isolog [Arabidopsis thaliana]
Length = 625
Score = 36.6 bits (83), Expect = 0.19
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -3
Query: 527 DGNTFSISPALSGPKLQAGDMLR 459
DGN F+ISPALSG ++ +GDMLR
Sbjct: 603 DGNGFTISPALSGLQIHSGDMLR 625
>gb|AAD25737.1|AF100324_5 IS1630 transposase [Mycoplasma fermentans]
Length = 366
Score = 31.6 bits (70), Expect = 6.1
Identities = 22/49 (44%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Frame = +3
Query: 105 EKTNECEKW-NHFTR*LSNDLNSYTTYSQLFK*IYAS--WVVDLKREHL 242
EKT EKW NHF N+LN Y +S LFK Y W V L E +
Sbjct: 58 EKTITREKWKNHFK--FLNNLNKYKEFSSLFKKEYDGKLWTVKLTIEKI 104
>ref|NP_047500.1| LEF-5=AcMNPV orf99 [Bombyx mori nuclear polyhedrosis virus]
gi|7460791|pir||T41840 LEF-5 orf99 - Bombyx mori nuclear
polyhedrosis virus (isolate T3)
gi|3745922|gb|AAC63769.1| LEF-5=AcMNPV orf99 [Bombyx
mori nuclear polyhedrosis virus]
Length = 265
Score = 31.6 bits (70), Expect = 6.1
Identities = 18/70 (25%), Positives = 34/70 (47%)
Frame = +3
Query: 102 KEKTNECEKWNHFTR*LSNDLNSYTTYSQLFK*IYASWVVDLKREHLCGCPAKFLHGRKY 281
KE+ + + + +N +N + Y++L++ I + VD C CP + LH +
Sbjct: 89 KERKQIRLQTEYLAKLFNNTINDFKLYTELYEFIERTEGVD------CCCPCQLLHKSLF 142
Query: 282 NTAQNLLSLN 311
NT + +LN
Sbjct: 143 NTRNYVKTLN 152
>ref|NP_701640.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496810|gb|AAN36364.1|AE014848_40 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1135
Score = 31.6 bits (70), Expect = 6.1
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 87 LQQHSKEKTNECEKWNHFTR*LSNDLNSYTTYSQLFK*I-YASWVVDLKREHLCGCPAKF 263
L H K+K E +N+ + + N+L TYS+L+ I Y V+ + KF
Sbjct: 85 LYTHKKKKRKEYYTYNNIYKDIINNLFKRNTYSKLYNNIKYKHKVIPFNK--------KF 136
Query: 264 LHGRKYNTAQNLLSLNKIYSHCYLEISSL 350
++ K NLL + IY H +SL
Sbjct: 137 IYHNK-----NLLFYSYIYEHFLASFTSL 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,921,717
Number of Sequences: 1393205
Number of extensions: 7308957
Number of successful extensions: 13751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13750
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
