Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004936A_C01 KMC004936A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08870.1| gb|AAD25584.1~gene_id:MTI20.26~similar to unknow... 51 8e-06
ref|NP_200608.1| putative protein; protein id: At5g58000.1 [Arab... 51 8e-06
gb|AAM94371.1|AF486633_1 CTD phosphatase-like 3 [Arabidopsis tha... 36 0.28
gb|AAO53198.1| hypothetical protein [Dictyostelium discoideum] 35 0.81
ref|NP_232227.1| ribonuclease R [Vibrio cholerae] gi|20139355|sp... 33 3.1
>dbj|BAB08870.1| gb|AAD25584.1~gene_id:MTI20.26~similar to unknown protein
[Arabidopsis thaliana]
Length = 1065
Score = 51.2 bits (121), Expect = 8e-06
Identities = 24/46 (52%), Positives = 29/46 (62%)
Frame = -1
Query: 555 SVTHVVSTYARTEKF*WAEKEKKFLVHPHWIYDTYCCWQKQPEANY 418
SVTHVV+ TEK WA +EKK++VH WI W KQPE N+
Sbjct: 1007 SVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENF 1052
>ref|NP_200608.1| putative protein; protein id: At5g58000.1 [Arabidopsis thaliana]
Length = 1008
Score = 51.2 bits (121), Expect = 8e-06
Identities = 24/46 (52%), Positives = 29/46 (62%)
Frame = -1
Query: 555 SVTHVVSTYARTEKF*WAEKEKKFLVHPHWIYDTYCCWQKQPEANY 418
SVTHVV+ TEK WA +EKK++VH WI W KQPE N+
Sbjct: 950 SVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENF 995
>gb|AAM94371.1|AF486633_1 CTD phosphatase-like 3 [Arabidopsis thaliana]
Length = 1241
Score = 36.2 bits (82), Expect = 0.28
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 552 VTHVVSTYARTEKF*WAEKEKKFLVHPHWIYDTYCCWQKQPEANY 418
VTHVV+ T+K WA +F+VHP W+ + +Q+ E Y
Sbjct: 1193 VTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRANENLY 1237
>gb|AAO53198.1| hypothetical protein [Dictyostelium discoideum]
Length = 947
Score = 34.7 bits (78), Expect = 0.81
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 549 THVVSTYARTEKF*WAEKEKKFLVHPHWIYDTYCCWQKQPEANY 418
TH+V+ + T+KF A+K ++ P WI D Y + P NY
Sbjct: 457 THLVTPFRGTDKFKIAQKSGGSIIKPKWIEDCYKLKSRLPIKNY 500
>ref|NP_232227.1| ribonuclease R [Vibrio cholerae] gi|20139355|sp|Q9KNY1|RNR_VIBCH
Ribonuclease R (RNase R) gi|11277579|pir||C82055
ribonuclease R VC2599 [imported] - Vibrio cholerae
(strain N16961 serogroup O1) gi|9657187|gb|AAF95740.1|
ribonuclease R [Vibrio cholerae]
Length = 821
Score = 32.7 bits (73), Expect = 3.1
Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 134 LLKCFNWIKHPQD*LGMIEYETMPTQCMMVSL--LSSINYPISQRPLSLLISLCLVLHQI 307
L K + +K +D G IE+ET+ T+ + + + SI P+ + LI C++L I
Sbjct: 417 LHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIE-PVVRNDAHKLIEECMILANI 475
Query: 308 TS*SSIGCAAESVAVMVVAPP 370
S S + A E+ V PP
Sbjct: 476 ASASLVEKAKEAALYRVHEPP 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,715,760
Number of Sequences: 1393205
Number of extensions: 9738411
Number of successful extensions: 22930
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22922
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
