Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004932A_C01 KMC004932A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM74442.1|AC123594_25 Putative nucleosid phosphatase [Oryza ... 40 0.021
ref|NP_536530.1| E6R [Monkeypox virus] gi|17529883|gb|AAL40561.1... 31 9.7
ref|NP_671613.1| EVM095 [Ectromelia virus] gi|22123841|gb|AAM923... 31 9.7
ref|NP_570499.1| putative early transcription factor VETFS; CMLV... 31 9.7
pir||T28534 hypothetical protein F6R - variola major virus gi|43... 31 9.7
>gb|AAM74442.1|AC123594_25 Putative nucleosid phosphatase [Oryza sativa (japonica
cultivar-group)]
Length = 702
Score = 40.0 bits (92), Expect = 0.021
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3
Query: 571 LQSRRSQSREDLNSSLAEAHLVKV 500
LQSRRSQSREDL SSLA+ HL KV
Sbjct: 679 LQSRRSQSREDLTSSLADLHLPKV 702
>ref|NP_536530.1| E6R [Monkeypox virus] gi|17529883|gb|AAL40561.1|AF380138_103 E6R
[Monkeypox virus]
Length = 637
Score = 31.2 bits (69), Expect = 9.7
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +2
Query: 305 TEQYLRCRFLETRVLVCAMQLVEEASLEVSSR---------KSIWNQSIWLHL*LSVISI 457
T +Y +FL+TRV+ C M ++E ++ R K+++N S+ + L +++
Sbjct: 232 TIRYHGRKFLDTRVVYCHMSKLQERDYMITRRQLCYHEMFDKNMYNVSMAV---LGQLNL 288
Query: 458 TKNL*TMFPEND 493
NL T+F E D
Sbjct: 289 MNNLDTLFQEQD 300
>ref|NP_671613.1| EVM095 [Ectromelia virus] gi|22123841|gb|AAM92399.1|AF523264_95
EVM095 [Ectromelia virus]
Length = 637
Score = 31.2 bits (69), Expect = 9.7
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +2
Query: 305 TEQYLRCRFLETRVLVCAMQLVEEASLEVSSR---------KSIWNQSIWLHL*LSVISI 457
T +Y +FL+TRV+ C M ++E ++ R K+++N S+ + L +++
Sbjct: 232 TIRYHGRKFLDTRVVYCHMSKLQERDYMITRRQLCYHEMFDKNMYNVSMAV---LGQLNL 288
Query: 458 TKNL*TMFPEND 493
NL T+F E D
Sbjct: 289 MNNLDTLFQEQD 300
>ref|NP_570499.1| putative early transcription factor VETFS; CMLV109 [Camelpox virus]
gi|18483019|gb|AAL73816.1|AF438165_106 putative early
transcription factor VETFS; CMLV109 [Camelpox virus
M-96] gi|19718061|gb|AAG37586.1| CMP108R [Camelpox virus
CMS]
Length = 637
Score = 31.2 bits (69), Expect = 9.7
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +2
Query: 305 TEQYLRCRFLETRVLVCAMQLVEEASLEVSSR---------KSIWNQSIWLHL*LSVISI 457
T +Y +FL+TRV+ C M ++E ++ R K+++N S+ + L +++
Sbjct: 232 TIRYHGRKFLDTRVVYCHMSKLQERDYMITRRQLCYHEMFDKNMYNVSMAV---LGQLNL 288
Query: 458 TKNL*TMFPEND 493
NL T+F E D
Sbjct: 289 MNNLDTLFQEQD 300
>pir||T28534 hypothetical protein F6R - variola major virus
gi|439014|gb|AAA60844.1| homolog of vaccinia virus CDS
D6R (early transcription factor VETF, small subunit);
putative
Length = 637
Score = 31.2 bits (69), Expect = 9.7
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +2
Query: 305 TEQYLRCRFLETRVLVCAMQLVEEASLEVSSR---------KSIWNQSIWLHL*LSVISI 457
T +Y +FL+TRV+ C M ++E ++ R K+++N S+ + L +++
Sbjct: 232 TIRYHGRKFLDTRVVYCHMSKLQERDYMITRRQLCYHEMFDKNMYNVSMAV---LGQLNL 288
Query: 458 TKNL*TMFPEND 493
NL T+F E D
Sbjct: 289 MNNLDTLFQEQD 300
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,487,180
Number of Sequences: 1393205
Number of extensions: 8512809
Number of successful extensions: 16673
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16673
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
