Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004921A_C01 KMC004921A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173925.2| hypothetical protein; protein id: At1g25540.1 [... 187 5e-47
ref|NP_083641.1| RIKEN cDNA 2610034E13 [Mus musculus] gi|1820394... 66 3e-10
ref|NP_112235.1| hypothetical protein TCBAP0758 [Homo sapiens] g... 65 4e-10
gb|AAM20739.1|AF261072_2 p78 [Homo sapiens] 65 5e-10
emb|CAB95526.1| hypothetical protein [Trypanosoma brucei] 39 0.036
>ref|NP_173925.2| hypothetical protein; protein id: At1g25540.1 [Arabidopsis
thaliana]
Length = 853
Score = 187 bits (476), Expect = 5e-47
Identities = 98/185 (52%), Positives = 124/185 (66%), Gaps = 15/185 (8%)
Frame = +3
Query: 6 KQLIVAVECTAAMGPYWSTILTDYLEKIIRSFAGNESTGQKPSASNVEFALVTYNTHGCY 185
KQLIV E TAA+GPYW TI++DYLEKIIRSF G+E G++ S VE +LV +N+HG Y
Sbjct: 6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65
Query: 186 SGFLVQRTGWTREPDVFFSWLSGVPFSGGGFNDGAIAEGLSEALMMFPNS---------- 335
LVQR+GWTR+ D+F WLS + F GGGFN+ A AEGL+EALM F S
Sbjct: 66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMRFSRSLNLTIFSDFM 125
Query: 336 -QSGSP----NQQNVDIHKHCILVAASNPYPLQTPVYVPRPQSLEKSETIDSDPGNRLYD 500
Q SP Q + D+ +HCIL+ ASNP+ L TPVY PR Q++E++E D+ +RL D
Sbjct: 126 TQMFSPPSGQAQPSNDLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSD 185
Query: 501 AEAVA 515
AE VA
Sbjct: 186 AETVA 190
>ref|NP_083641.1| RIKEN cDNA 2610034E13 [Mus musculus] gi|18203942|gb|AAH21333.1|
Similar to hypothetical protein TCBAP0758 [Mus musculus]
gi|21410398|gb|AAH31138.1| RIKEN cDNA 2610034E13 gene
[Mus musculus]
Length = 745
Score = 65.9 bits (159), Expect = 3e-10
Identities = 45/138 (32%), Positives = 64/138 (45%), Gaps = 3/138 (2%)
Frame = +3
Query: 12 LIVAVECTAAMGPYWSTILTDYLEKIIRSFAGNE--STGQKPSASNVEFALVTYNTHGCY 185
++ +E TA +GPY+ + YL I F G T +++LV +NT C
Sbjct: 18 VVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 186 SGFLVQRTGWTREPDVFFSWLSGVPFSGGGFND-GAIAEGLSEALMMFPNSQSGSPNQQN 362
VQ T F +WL G+ F GGG IAEGLS AL +F + + +Q
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFK--KMREQI 135
Query: 363 VDIHKHCILVAASNPYPL 416
H+ C+L+ S PY L
Sbjct: 136 GQTHRVCLLICNSPPYLL 153
>ref|NP_112235.1| hypothetical protein TCBAP0758 [Homo sapiens]
gi|12053009|emb|CAB66680.1| hypothetical protein [Homo
sapiens]
Length = 715
Score = 65.5 bits (158), Expect = 4e-10
Identities = 45/138 (32%), Positives = 64/138 (45%), Gaps = 3/138 (2%)
Frame = +3
Query: 12 LIVAVECTAAMGPYWSTILTDYLEKIIRSFAGNE--STGQKPSASNVEFALVTYNTHGCY 185
++ +E TA +GPY+ + YL I F G T +++LV +NT C
Sbjct: 18 VVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 186 SGFLVQRTGWTREPDVFFSWLSGVPFSGGGFND-GAIAEGLSEALMMFPNSQSGSPNQQN 362
VQ T F +WL G+ F GGG IAEGLS AL +F + + +Q
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFK--KMREQI 135
Query: 363 VDIHKHCILVAASNPYPL 416
H+ C+L+ S PY L
Sbjct: 136 GQTHRVCLLICNSPPYLL 153
>gb|AAM20739.1|AF261072_2 p78 [Homo sapiens]
Length = 747
Score = 65.1 bits (157), Expect = 5e-10
Identities = 45/138 (32%), Positives = 64/138 (45%), Gaps = 3/138 (2%)
Frame = +3
Query: 12 LIVAVECTAAMGPYWSTILTDYLEKIIRSFAGNE--STGQKPSASNVEFALVTYNTHGCY 185
++ +E TA +GPY+ + YL I F G T +++LV +NT C
Sbjct: 18 VVSVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCA 77
Query: 186 SGFLVQRTGWTREPDVFFSWLSGVPFSGGGFND-GAIAEGLSEALMMFPNSQSGSPNQQN 362
VQ T F +WL G+ F GGG IAEGLS AL +F + + +Q
Sbjct: 78 PESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFK--KMREQI 135
Query: 363 VDIHKHCILVAASNPYPL 416
H+ C+L+ S PY L
Sbjct: 136 GQTHRVCLLICNSPPYLL 153
>emb|CAB95526.1| hypothetical protein [Trypanosoma brucei]
Length = 413
Score = 38.9 bits (89), Expect = 0.036
Identities = 28/97 (28%), Positives = 45/97 (45%)
Frame = -1
Query: 360 SADSGFHFENLGTSSELQKALQQLHHH*NHHQKRVHLKATRRKHLVLLSSQSVAQGNQNN 181
+A SG +++G EL +HHH +HH ++H + + +H L+S+ V Q Q
Sbjct: 180 NATSGSDTQHVG---ELASNAYPMHHHHHHHHYQLHQQQKQPQHTPLVSTSRVQQQEQPP 236
Query: 180 IHEYYR*LGQTQRWKQKASAQLTRFQQKT**SSQGNP 70
YY Q+ +Q S R QQ+ + G P
Sbjct: 237 WAPYY----NDQQHRQHHSVHHHRHQQQQQQLAYGQP 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,631,848
Number of Sequences: 1393205
Number of extensions: 10522126
Number of successful extensions: 38541
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38124
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
