Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004919A_C01 KMC004919A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51318.1|AC025815_5 unknown protein, 5' partial [Arabidopsi... 115 7e-25
ref|NP_195548.1| putative protein; protein id: At4g38350.1 [Arab... 114 1e-24
pir||T05663 hypothetical protein F22I13.120 - Arabidopsis thalia... 114 1e-24
gb|AAF24537.1|AC007534_18 F7F22.1 [Arabidopsis thaliana] 97 2e-19
gb|AAF25228.1| NPC1 protein [Dictyostelium discoideum] gi|669442... 88 9e-17
>gb|AAG51318.1|AC025815_5 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 524
Score = 115 bits (287), Expect = 7e-25
Identities = 59/78 (75%), Positives = 68/78 (86%)
Frame = -1
Query: 666 MGASVFSGITLTKLVGVIVLYFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFGP 487
MGASVFSGITLTKLVGVIVL FSR+EVFV+YYF+MYL+LVLLGFLHGLVFLPV LS+FGP
Sbjct: 445 MGASVFSGITLTKLVGVIVLGFSRSEVFVVYYFKMYLALVLLGFLHGLVFLPVFLSMFGP 504
Query: 486 PSRCTIIEQEENRSSTSS 433
R E++++R S SS
Sbjct: 505 APRHVEGERQDHRPSVSS 522
>ref|NP_195548.1| putative protein; protein id: At4g38350.1 [Arabidopsis thaliana]
Length = 1054
Score = 114 bits (285), Expect = 1e-24
Identities = 55/78 (70%), Positives = 68/78 (86%)
Frame = -1
Query: 666 MGASVFSGITLTKLVGVIVLYFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFGP 487
MGASVFSGITLTKLVGVIVL F+R+E+FV+YYFQMYL+LV++GFLHGLVFLPV+LS+ GP
Sbjct: 974 MGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLAGP 1033
Query: 486 PSRCTIIEQEENRSSTSS 433
P IEQ++ ++SS
Sbjct: 1034 PQLNLDIEQQQTDEASSS 1051
>pir||T05663 hypothetical protein F22I13.120 - Arabidopsis thaliana
gi|4539343|emb|CAB37491.1| putative protein [Arabidopsis
thaliana] gi|7270819|emb|CAB80500.1| putative protein
[Arabidopsis thaliana]
Length = 1055
Score = 114 bits (285), Expect = 1e-24
Identities = 55/78 (70%), Positives = 68/78 (86%)
Frame = -1
Query: 666 MGASVFSGITLTKLVGVIVLYFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFGP 487
MGASVFSGITLTKLVGVIVL F+R+E+FV+YYFQMYL+LV++GFLHGLVFLPV+LS+ GP
Sbjct: 975 MGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLAGP 1034
Query: 486 PSRCTIIEQEENRSSTSS 433
P IEQ++ ++SS
Sbjct: 1035 PQLNLDIEQQQTDEASSS 1052
>gb|AAF24537.1|AC007534_18 F7F22.1 [Arabidopsis thaliana]
Length = 1275
Score = 97.1 bits (240), Expect = 2e-19
Identities = 48/53 (90%), Positives = 52/53 (97%)
Frame = -1
Query: 666 MGASVFSGITLTKLVGVIVLYFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPV 508
MGASVFSGITLTKLVGVIVL FSR+EVFV+YYF+MYL+LVLLGFLHGLVFLPV
Sbjct: 1180 MGASVFSGITLTKLVGVIVLGFSRSEVFVVYYFKMYLALVLLGFLHGLVFLPV 1232
>gb|AAF25228.1| NPC1 protein [Dictyostelium discoideum] gi|6694424|gb|AAF25229.1|
NPC1 protein [Dictyostelium discoideum]
Length = 1342
Score = 88.2 bits (217), Expect = 9e-17
Identities = 40/59 (67%), Positives = 52/59 (87%)
Frame = -1
Query: 666 MGASVFSGITLTKLVGVIVLYFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFG 490
MG+S+ SGI +TKL+GV+VL FS +E+F +YYF+MYLS+V LG LHGLVFLPV+LS+FG
Sbjct: 1262 MGSSIISGIFITKLLGVVVLGFSTSEIFTVYYFRMYLSIVFLGGLHGLVFLPVLLSLFG 1320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,604,108
Number of Sequences: 1393205
Number of extensions: 10235587
Number of successful extensions: 23387
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 22367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23375
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
