Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004912A_C01 KMC004912A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86196 hypothetical protein [imported] - Arabidopsis thalia... 47 8e-10
ref|NP_172105.1| hypothetical protein; protein id: At1g06150.1 [... 47 8e-10
gb|AAM97767.1| hypothetical protein [Arabidopsis thaliana] 43 2e-07
ref|NP_180686.1| hypothetical protein; protein id: At2g31280.1 [... 43 0.002
ref|NP_565640.1| expressed protein; protein id: At2g27230.1, sup... 40 0.003
>pir||H86196 hypothetical protein [imported] - Arabidopsis thaliana
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity
to an unknown protein T5J8.5 gi|4263522 from Arabidopsis
thaliana BAC T5J8 gb|AC004044 and contains multiple PPR
PF|01535 repeats. ESTs gb|AV565358, gb|AV558710,
gb|AV524184 come from this gene
Length = 1322
Score = 46.6 bits (109), Expect(3) = 8e-10
Identities = 23/42 (54%), Positives = 29/42 (68%)
Frame = -2
Query: 423 FLEIADVIRSLGLTVLKGATKAHDEKILLCFVVEGPTPTEMY 298
FLEIA+VIRSL L +L+G T+ EK +CFVVEG M+
Sbjct: 674 FLEIANVIRSLELIILRGTTEKQGEKTWICFVVEGQNNKVMH 715
Score = 31.6 bits (70), Expect(3) = 8e-10
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 482 ENLTKDAQMIVEMLCEESTLFLK 414
ENL K+ M++EMLCEE + FL+
Sbjct: 654 ENLDKEGVMLIEMLCEECSHFLE 676
Score = 25.0 bits (53), Expect(3) = 8e-10
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -1
Query: 295 RLDILWPLVQILPSQST 245
R+DILW LVQI ++T
Sbjct: 716 RMDILWSLVQIFQPKAT 732
>ref|NP_172105.1| hypothetical protein; protein id: At1g06150.1 [Arabidopsis
thaliana]
Length = 1288
Score = 46.6 bits (109), Expect(3) = 8e-10
Identities = 23/42 (54%), Positives = 29/42 (68%)
Frame = -2
Query: 423 FLEIADVIRSLGLTVLKGATKAHDEKILLCFVVEGPTPTEMY 298
FLEIA+VIRSL L +L+G T+ EK +CFVVEG M+
Sbjct: 640 FLEIANVIRSLELIILRGTTEKQGEKTWICFVVEGQNNKVMH 681
Score = 31.6 bits (70), Expect(3) = 8e-10
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 482 ENLTKDAQMIVEMLCEESTLFLK 414
ENL K+ M++EMLCEE + FL+
Sbjct: 620 ENLDKEGVMLIEMLCEECSHFLE 642
Score = 25.0 bits (53), Expect(3) = 8e-10
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -1
Query: 295 RLDILWPLVQILPSQST 245
R+DILW LVQI ++T
Sbjct: 682 RMDILWSLVQIFQPKAT 698
>gb|AAM97767.1| hypothetical protein [Arabidopsis thaliana]
Length = 720
Score = 42.7 bits (99), Expect(3) = 2e-07
Identities = 20/34 (58%), Positives = 25/34 (72%)
Frame = -2
Query: 423 FLEIADVIRSLGLTVLKGATKAHDEKILLCFVVE 322
FLEIA+VIRSL L +L+G T+ EK +CFV E
Sbjct: 659 FLEIANVIRSLDLVILRGFTETQGEKTWICFVTE 692
Score = 28.9 bits (63), Expect(3) = 2e-07
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 482 ENLTKDAQMIVEMLCEESTLFLK 414
ENL K +++EMLCEE FL+
Sbjct: 639 ENLNKHGMVLIEMLCEECGHFLE 661
Score = 23.1 bits (48), Expect(3) = 2e-07
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 295 RLDILWPLVQI 263
R+DILW LVQI
Sbjct: 701 RMDILWSLVQI 711
>ref|NP_180686.1| hypothetical protein; protein id: At2g31280.1 [Arabidopsis
thaliana] gi|25408145|pir||G84718 hypothetical protein
At2g31280 [imported] - Arabidopsis thaliana
gi|4432823|gb|AAD20673.1| hypothetical protein
[Arabidopsis thaliana]
Length = 723
Score = 42.7 bits (99), Expect = 0.002
Identities = 20/34 (58%), Positives = 25/34 (72%)
Frame = -2
Query: 423 FLEIADVIRSLGLTVLKGATKAHDEKILLCFVVE 322
FLEIA+VIRSL L +L+G T+ EK +CFV E
Sbjct: 655 FLEIANVIRSLDLVILRGFTETQGEKTWICFVTE 688
>ref|NP_565640.1| expressed protein; protein id: At2g27230.1, supported by cDNA:
gi_14334955 [Arabidopsis thaliana]
gi|25407871|pir||D84670 hypothetical protein At2g27230
[imported] - Arabidopsis thaliana
gi|5306274|gb|AAD42006.1| expressed protein [Arabidopsis
thaliana]
Length = 650
Score = 40.4 bits (93), Expect(2) = 0.003
Identities = 21/34 (61%), Positives = 24/34 (69%)
Frame = -2
Query: 423 FLEIADVIRSLGLTVLKGATKAHDEKILLCFVVE 322
FLEIAD IRSLGLT+LKG + +KI F VE
Sbjct: 568 FLEIADWIRSLGLTILKGVIETRVDKIWARFTVE 601
Score = 20.8 bits (42), Expect(2) = 0.003
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 452 VEMLCEESTLFLK 414
VEMLCE+ FL+
Sbjct: 558 VEMLCEQRGFFLE 570
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,684,405
Number of Sequences: 1393205
Number of extensions: 10373991
Number of successful extensions: 28756
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28751
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
