Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004908A_C01 KMC004908A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61435.1| unknown [Arabidopsis thaliana] 147 8e-35
sp|Q9LU41|ACA9_ARATH Potential calcium-transporting ATPase 9, pl... 147 8e-35
ref|NP_188755.2| potential calcium-transporting ATPase 9, plasma... 147 8e-35
dbj|BAC56802.1| putative Calcium-transporting ATPase 8, plasma m... 133 2e-30
emb|CAC40036.1| P-type ATPase [Hordeum vulgare] 132 4e-30
>gb|AAM61435.1| unknown [Arabidopsis thaliana]
Length = 435
Score = 147 bits (372), Expect = 8e-35
Identities = 70/99 (70%), Positives = 81/99 (81%)
Frame = -1
Query: 624 NEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLL 445
NEFNARKP+EMNVFRGV KN LF+ IV +TFILQIII+ FLGKF TVRL W LWLAS++
Sbjct: 337 NEFNARKPDEMNVFRGVNKNPLFVAIVGVTFILQIIIVTFLGKFAHTVRLGWQLWLASII 396
Query: 444 IGLISWPLAIAGKFIPVPKTPLSRYILRPLRRLRRSRAA 328
IGL+SWPLAI GK IPVPKTP+S Y +P R+ + SR A
Sbjct: 397 IGLVSWPLAIVGKLIPVPKTPMSVYFKKPFRKYKASRNA 435
>sp|Q9LU41|ACA9_ARATH Potential calcium-transporting ATPase 9, plasma membrane-type
(Ca2+-ATPase, isoform 9) gi|9280219|dbj|BAB01709.1|
Ca2+-transporting ATPase [Arabidopsis thaliana]
Length = 1073
Score = 147 bits (372), Expect = 8e-35
Identities = 70/99 (70%), Positives = 81/99 (81%)
Frame = -1
Query: 624 NEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLL 445
NEFNARKP+EMNVFRGV KN LF+ IV +TFILQIII+ FLGKF TVRL W LWLAS++
Sbjct: 975 NEFNARKPDEMNVFRGVNKNPLFVAIVGVTFILQIIIVTFLGKFAHTVRLGWQLWLASII 1034
Query: 444 IGLISWPLAIAGKFIPVPKTPLSRYILRPLRRLRRSRAA 328
IGL+SWPLAI GK IPVPKTP+S Y +P R+ + SR A
Sbjct: 1035 IGLVSWPLAIVGKLIPVPKTPMSVYFKKPFRKYKASRNA 1073
>ref|NP_188755.2| potential calcium-transporting ATPase 9, plasma membrane-type
(Ca2+-ATPase, isoform 9); protein id: At3g21180.1
[Arabidopsis thaliana]
Length = 1086
Score = 147 bits (372), Expect = 8e-35
Identities = 70/99 (70%), Positives = 81/99 (81%)
Frame = -1
Query: 624 NEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLL 445
NEFNARKP+EMNVFRGV KN LF+ IV +TFILQIII+ FLGKF TVRL W LWLAS++
Sbjct: 988 NEFNARKPDEMNVFRGVNKNPLFVAIVGVTFILQIIIVTFLGKFAHTVRLGWQLWLASII 1047
Query: 444 IGLISWPLAIAGKFIPVPKTPLSRYILRPLRRLRRSRAA 328
IGL+SWPLAI GK IPVPKTP+S Y +P R+ + SR A
Sbjct: 1048 IGLVSWPLAIVGKLIPVPKTPMSVYFKKPFRKYKASRNA 1086
>dbj|BAC56802.1| putative Calcium-transporting ATPase 8, plasma membrane-type [Oryza
sativa (japonica cultivar-group)]
gi|28411839|dbj|BAC57314.1| putative Calcium-transporting
ATPase 8, plasma membrane-type [Oryza sativa (japonica
cultivar-group)]
Length = 1082
Score = 133 bits (334), Expect = 2e-30
Identities = 65/101 (64%), Positives = 76/101 (74%)
Frame = -1
Query: 624 NEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLL 445
NEFNARKPEE NVF+G+TKN LFMGI+ +T + QI+IIEFLGKF TVRLNW LWL S+
Sbjct: 978 NEFNARKPEERNVFKGITKNHLFMGIIAITTVFQILIIEFLGKFFKTVRLNWRLWLVSVA 1037
Query: 444 IGLISWPLAIAGKFIPVPKTPLSRYILRPLRRLRRSRAAQQ 322
IG+ISWPLA GKFIPVP PL Y +P R SR ++
Sbjct: 1038 IGIISWPLAYLGKFIPVPVRPLQDY-FKPTCWRRASRRDEE 1077
>emb|CAC40036.1| P-type ATPase [Hordeum vulgare]
Length = 593
Score = 132 bits (332), Expect = 4e-30
Identities = 58/88 (65%), Positives = 73/88 (82%)
Frame = -1
Query: 624 NEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLL 445
NEFNARKPEE+N+F GV++N LF+ +V +T +LQ+IIIEFLGKFT TV+L+W LWL SL
Sbjct: 489 NEFNARKPEELNIFEGVSRNHLFLAVVSVTVVLQVIIIEFLGKFTSTVKLSWQLWLVSLA 548
Query: 444 IGLISWPLAIAGKFIPVPKTPLSRYILR 361
I +SWPLA+ GKFIPVP+TPL IL+
Sbjct: 549 IAFVSWPLALVGKFIPVPQTPLKNLILK 576
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,818,991
Number of Sequences: 1393205
Number of extensions: 10780429
Number of successful extensions: 24414
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 23675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24394
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
