Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004906A_C01 KMC004906A_c01
(361 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_739668.1| NADH dehydrogenase subunit 4 [Cataetyx rubriros... 34 0.41
ref|XP_229100.1| similar to Heat shock protein HSP 90-beta (HSP ... 31 3.5
sp|Q05347|RFBX_YERPS Putative O-antigen export protein gi|744905... 30 5.9
>ref|NP_739668.1| NADH dehydrogenase subunit 4 [Cataetyx rubrirostris]
gi|25005547|dbj|BAC23212.1| NADH dehydrogenase subunit 4
[Cataetyx rubrirostris]
Length = 460
Score = 34.3 bits (77), Expect = 0.41
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = -2
Query: 342 LVSLSWLLPPGREGPDLEFFSVFCT*NIFCCNCPL*LELCSLKCPIIIIIILVLSSY--H 169
LVSL+WL P G + T N+F PL L L C ++ ++IL ++
Sbjct: 36 LVSLTWLKSPAEAG--------WSTLNLFMATDPLSTPLLVLTCWLLPLMILASQNHTAQ 87
Query: 168 SPSS*I*GLLSKLYIMLELLYFA*KLTEVLIFYSVEFSN*YSNIIILER 22
P++ ++ L + L A TEV++FY + + +II+ R
Sbjct: 88 KPANRQRVFITLLISLQFFLILAFSATEVIMFYVMFEATLIPTLIIITR 136
>ref|XP_229100.1| similar to Heat shock protein HSP 90-beta (HSP 84) (Tumor specific
transplantation 84 kDa antigen) (TSTA) [Rattus
norvegicus]
Length = 145
Score = 31.2 bits (69), Expect = 3.5
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 247 LSTVTRALFFKMPHHYYNNFSS*FLPFSFLLNIRTIVKI 131
L T T LFF++ YN F S ++ S +LN+R V+I
Sbjct: 104 LLTRTLLLFFRLAWRLYNKFPSFYVMVSVMLNVRMQVQI 142
>sp|Q05347|RFBX_YERPS Putative O-antigen export protein gi|7449056|pir||H47070 probable
O-antigen export protein - Yersinia pseudotuberculosis
gi|409590|gb|AAB49403.1| O-unit flippase-like protein
[Yersinia pseudotuberculosis]
Length = 437
Score = 30.4 bits (67), Expect = 5.9
Identities = 17/66 (25%), Positives = 36/66 (53%), Gaps = 7/66 (10%)
Frame = -1
Query: 178 FLPFSFLLNIRTIVKIVYYVG-------VTLFCIEAHGGSYLLFG*IFQLI*QYYYIRKS 20
++P +F I T+ K++ Y+ +TL+ + +GG + LF + L+ Q YI S
Sbjct: 193 YIPAAFFGVISTLFKVIPYLKCKNFLNKLTLYTLIKNGGGFFLFSVLSALVLQVDYIVMS 252
Query: 19 EFILKK 2
+ ++++
Sbjct: 253 QTLVER 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 286,176,292
Number of Sequences: 1393205
Number of extensions: 5443720
Number of successful extensions: 10386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10386
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
