Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004904A_C01 KMC004904A_c01
(378 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_238910.1| hypothetical protein XP_238910 [Rattus norvegicus] 31 3.4
ref|NP_473336.2| hypothetical protein [Plasmodium falciparum 3D7... 30 7.5
>ref|XP_238910.1| hypothetical protein XP_238910 [Rattus norvegicus]
Length = 372
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1
Query: 94 LKHNPYTLIR----YQGIINDQVYKVVYHSISNNKIFSRNGQNLHRPSLIPIWKQLSQTP 261
L +P T +R +QG + V S+ N I GQ L++ + IPIW + P
Sbjct: 63 LSQSPGTHLRSTCMFQGKVAMPATSVALPSLLNTSISGETGQRLNQQTYIPIWLNIGPEP 122
>ref|NP_473336.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|8052290|emb|CAB39073.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1334
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +1
Query: 76 KPNMNQLKHNPYTLIRYQGIINDQVYKVVYHSISNNKIFSRNG 204
K N+ ++HN + +Y+ I YK Y NN + S+NG
Sbjct: 1058 KNNIKNIRHNNINMNQYEENIEKDKYKYKYKYNYNNDMSSKNG 1100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,268,801
Number of Sequences: 1393205
Number of extensions: 6268638
Number of successful extensions: 12826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12825
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)