Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004903A_C01 KMC004903A_c01
(347 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD46188.1| plasma membrane proton ATPase [Nicotiana plumbagi... 61 2e-10
sp|Q43128|PMAA_ARATH ATPase 10, plasma membrane-type (Proton pum... 61 4e-10
emb|CAD29315.1| plasma membrane H+-ATPase [Oryza sativa (japonic... 59 5e-10
gb|AAK92626.1|AC079633_6 Putative plasma membrane proton ATPase ... 59 5e-10
dbj|BAC42716.1| putative H+-transporting ATPase [Arabidopsis tha... 59 1e-09
>gb|AAD46188.1| plasma membrane proton ATPase [Nicotiana plumbaginifolia]
Length = 950
Score = 61.2 bits (147), Expect(2) = 2e-10
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +3
Query: 207 LGFVLLALIWEYDFPPFMVLIIAILNDGNTFT 302
LGF+LLALIWEYDFPPFMVLIIAILNDG T
Sbjct: 665 LGFMLLALIWEYDFPPFMVLIIAILNDGTIMT 696
Score = 23.9 bits (50), Expect(2) = 2e-10
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 50 IYAVSITIRIVV 85
IYAVSITIRIV+
Sbjct: 654 IYAVSITIRIVL 665
>sp|Q43128|PMAA_ARATH ATPase 10, plasma membrane-type (Proton pump 10)
gi|13096793|gb|AAB32310.2| plasma membrane H(+)-ATPase
isoform AHA10 [Arabidopsis thaliana]
gi|13162530|gb|AAD50009.3|AC007651_4 H+-transporting
ATPase AHA10 [Arabidopsis thaliana]
Length = 947
Score = 60.8 bits (146), Expect(2) = 4e-10
Identities = 28/32 (87%), Positives = 28/32 (87%)
Frame = +3
Query: 207 LGFVLLALIWEYDFPPFMVLIIAILNDGNTFT 302
LGF LLALIWEYDFPPFMVLIIAILNDG T
Sbjct: 665 LGFTLLALIWEYDFPPFMVLIIAILNDGTIMT 696
Score = 23.5 bits (49), Expect(2) = 4e-10
Identities = 10/12 (83%), Positives = 12/12 (99%)
Frame = +2
Query: 50 IYAVSITIRIVV 85
+YAVSITIRIV+
Sbjct: 654 VYAVSITIRIVL 665
>emb|CAD29315.1| plasma membrane H+-ATPase [Oryza sativa (japonica cultivar-group)]
Length = 943
Score = 59.3 bits (142), Expect(2) = 5e-10
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 207 LGFVLLALIWEYDFPPFMVLIIAILNDGNTFT 302
+GFVLLA IWEYDFPPFMVLIIAILNDG T
Sbjct: 666 IGFVLLASIWEYDFPPFMVLIIAILNDGTIMT 697
Score = 24.6 bits (52), Expect(2) = 5e-10
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 50 IYAVSITIRIVV 85
IYAVSITIRIV+
Sbjct: 655 IYAVSITIRIVI 666
>gb|AAK92626.1|AC079633_6 Putative plasma membrane proton ATPase [Oryza sativa]
Length = 941
Score = 59.3 bits (142), Expect(2) = 5e-10
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 207 LGFVLLALIWEYDFPPFMVLIIAILNDGNTFT 302
+GFVLLA IWEYDFPPFMVLIIAILNDG T
Sbjct: 666 IGFVLLASIWEYDFPPFMVLIIAILNDGTIMT 697
Score = 24.6 bits (52), Expect(2) = 5e-10
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 50 IYAVSITIRIVV 85
IYAVSITIRIV+
Sbjct: 655 IYAVSITIRIVI 666
>dbj|BAC42716.1| putative H+-transporting ATPase [Arabidopsis thaliana]
Length = 960
Score = 58.5 bits (140), Expect(2) = 1e-09
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +3
Query: 207 LGFVLLALIWEYDFPPFMVLIIAILNDGNTFT 302
LGF+LLALIW++DFPPFMVLIIAILNDG T
Sbjct: 666 LGFMLLALIWQFDFPPFMVLIIAILNDGTIMT 697
Score = 23.9 bits (50), Expect(2) = 1e-09
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 50 IYAVSITIRIVV 85
IYAVSITIRIV+
Sbjct: 655 IYAVSITIRIVL 666
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,361,368
Number of Sequences: 1393205
Number of extensions: 5354811
Number of successful extensions: 9767
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 9539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9766
length of database: 448,689,247
effective HSP length: 91
effective length of database: 321,907,592
effective search space used: 7725782208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
