Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004899A_C01 KMC004899A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65386.1| OJ1349_D05.6 [Oryza sativa (japonica cultivar-gr... 43 0.005
ref|NP_594130.1| putative glucoamylase I (alpha-1,4-glucan gluco... 33 4.8
ref|NP_558612.1| dolichol-phosphate mannosyltransferase [Pyrobac... 33 4.8
ref|NP_759389.1| Ribosomal protein L22 [Vibrio vulnificus CMCP6]... 32 6.2
dbj|BAC57375.1| putative endo-1,4-beta-xylanase homolog [Oryza s... 32 6.2
>dbj|BAC65386.1| OJ1349_D05.6 [Oryza sativa (japonica cultivar-group)]
Length = 302
Score = 42.7 bits (99), Expect = 0.005
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = -2
Query: 643 SSLQGTETDELPMPSPV--GGESKYEETDASDISVKLLSVSERYDDFKANKEAKLEEWLE 470
S+ TE D+LP+ S + + +E+ ++DIS + E Y+ FK +E KL+EWL
Sbjct: 237 STPSDTEKDDLPVSSQLLDNNTATMKESSSTDISKSV----ENYNKFKEEQELKLQEWLR 292
Query: 469 GTSNLDDN 446
+ DDN
Sbjct: 293 QSEEADDN 300
>ref|NP_594130.1| putative glucoamylase I (alpha-1,4-glucan glucosidase),
extracellular starch-degrading enzyme; by similarity to
S. cerevisiae STA1; contains chitinase family signature
[Schizosaccharomyces pombe] gi|13624759|emb|CAC36921.1|
putative glucoamylase I (alpha-1,4-glucan glucosidase),
extracellular starch-degrading enzyme; by similarity to
S. cerevisiae STA1; contains chitinase family signature
[Schizosaccharomyces pombe]
Length = 1236
Score = 32.7 bits (73), Expect = 4.8
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 423 LFSSPVMQ-LSSRLLVPSSHSSSLASLLALKSSYLSETDNNLTLISLASVSSYLDSPP-- 593
+ SSP+ LSS +P+S SS +S + SS +S + T S++S+ S S P
Sbjct: 530 IISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSS 589
Query: 594 TGLGMGNSSVS 626
T L + +SS S
Sbjct: 590 TSLSISSSSTS 600
>ref|NP_558612.1| dolichol-phosphate mannosyltransferase [Pyrobaculum aerophilum]
gi|18159363|gb|AAL62794.1| dolichol-phosphate
mannosyltransferase [Pyrobaculum aerophilum]
Length = 311
Score = 32.7 bits (73), Expect = 4.8
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 275 LIFLSSYQIISYITSITSLFSLPFS--LWVFVGGIGKYILAKT-----FYEV*PNSPFFI 433
L+ L++Y + YI +L +LP S LW +VG + ++ A F EV P S I
Sbjct: 220 LLELTNYFTVRYIAG--ALVALPVSILLWNYVGLLAPFVGAIVKWLFIFREVGPASTLTI 277
Query: 434 TCNAIIIKVAG 466
A++IK+AG
Sbjct: 278 KALAVLIKIAG 288
>ref|NP_759389.1| Ribosomal protein L22 [Vibrio vulnificus CMCP6]
gi|27359978|gb|AAO08916.1|AE016798_76 Ribosomal protein
L22 [Vibrio vulnificus CMCP6]
Length = 180
Score = 32.3 bits (72), Expect = 6.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -2
Query: 589 GESKYEETDASDISVKLLSVSERYDDFKANKEAKLEE 479
GE+ + E +A+D + LL + +D+F AN +K+E+
Sbjct: 118 GETNWMEAEANDFAASLLMPKDAFDNFIANVSSKVED 154
>dbj|BAC57375.1| putative endo-1,4-beta-xylanase homolog [Oryza sativa (japonica
cultivar-group)]
Length = 1082
Score = 32.3 bits (72), Expect = 6.2
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 471 SSHSSSLASLLALKSSYLSETDNNLTLISLAS-VSSYLDSPPTGLGMGNSSVSVPCKDEV 647
S+H S + SLLA K + + + + L ++ V YL+ PP G+ + SV+V C
Sbjct: 300 STHYSPVGSLLASKEKW-EKMEGSFCLTNMPKRVVFYLEGPPAGVDLIIDSVNVTCSGYQ 358
Query: 648 MLADV 662
L +V
Sbjct: 359 QLKEV 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,520,247
Number of Sequences: 1393205
Number of extensions: 11260462
Number of successful extensions: 34751
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34720
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
