Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004885A_C01 KMC004885A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199445.1| leucine-rich repeat transmembrane protein kinas... 69 2e-11
gb|AAO41929.1| putative leucine-rich repeat transmembrane protei... 69 2e-11
dbj|BAB85306.1| P0703B11.26 [Oryza sativa (japonica cultivar-gro... 46 2e-04
dbj|BAC24918.1| putative receptor-type protein kinase LRK1 [Oryz... 45 3e-04
ref|NP_565084.1| leucine-rich repeat transmembrane protein kinas... 43 0.001
>ref|NP_199445.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g46330.1 [Arabidopsis thaliana]
gi|10177714|dbj|BAB11088.1| receptor protein kinase
[Arabidopsis thaliana]
Length = 1173
Score = 69.3 bits (168), Expect = 2e-11
Identities = 35/90 (38%), Positives = 59/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 468 EFLTRRRPTGLSEEDDGLPITLREVVARALANGTEQLVNIVDPMLTCNVTEY-HVEVLTE 292
E +T++RPT L++ED +TLR++V +++ NG + +V ++D L ++ E + +
Sbjct: 1069 ELMTKQRPTSLNDEDSQ-DMTLRQLVEKSIGNGRKGMVRVLDMELGDSIVSLKQEEAIED 1127
Query: 291 LIKLSLLCTLPDPESRPNMNEVLSALMKLQ 202
+KL L CT PE RP+MNE+L+ LMKL+
Sbjct: 1128 FLKLCLFCTSSRPEDRPDMNEILTHLMKLR 1157
>gb|AAO41929.1| putative leucine-rich repeat transmembrane protein kinase
[Arabidopsis thaliana]
Length = 1173
Score = 69.3 bits (168), Expect = 2e-11
Identities = 35/90 (38%), Positives = 59/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 468 EFLTRRRPTGLSEEDDGLPITLREVVARALANGTEQLVNIVDPMLTCNVTEY-HVEVLTE 292
E +T++RPT L++ED +TLR++V +++ NG + +V ++D L ++ E + +
Sbjct: 1069 ELMTKQRPTSLNDEDSQ-DMTLRQLVEKSIGNGRKGMVRVLDMELGDSIVSLKQEEAIED 1127
Query: 291 LIKLSLLCTLPDPESRPNMNEVLSALMKLQ 202
+KL L CT PE RP+MNE+L+ LMKL+
Sbjct: 1128 FLKLCLFCTSSRPEDRPDMNEILTHLMKLR 1157
>dbj|BAB85306.1| P0703B11.26 [Oryza sativa (japonica cultivar-group)]
gi|19571061|dbj|BAB86487.1| P0485B12.18 [Oryza sativa
(japonica cultivar-group)]
Length = 947
Score = 45.8 bits (107), Expect = 2e-04
Identities = 33/85 (38%), Positives = 48/85 (55%)
Frame = -3
Query: 468 EFLTRRRPTGLSEEDDGLPITLREVVARALANGTEQLVNIVDPMLTCNVTEYHVEVLTEL 289
E LT RRP E+D + L ++V AL G +L + +DP L C E+ +E +
Sbjct: 856 EVLTGRRPVEYLEDD---VVVLCDLVRSALEEG--RLEDCMDPRL-CG--EFPMEEALPI 907
Query: 288 IKLSLLCTLPDPESRPNMNEVLSAL 214
IKL L+CT P +RP+M EV++ L
Sbjct: 908 IKLGLVCTSRVPSNRPDMGEVVNIL 932
>dbj|BAC24918.1| putative receptor-type protein kinase LRK1 [Oryza sativa (japonica
cultivar-group)]
Length = 669
Score = 45.4 bits (106), Expect = 3e-04
Identities = 31/80 (38%), Positives = 44/80 (54%)
Frame = -3
Query: 453 RRPTGLSEEDDGLPITLREVVARALANGTEQLVNIVDPMLTCNVTEYHVEVLTELIKLSL 274
RRP SEE D PI L ++V N E L+++VD L EY+++ +KL L
Sbjct: 551 RRPIMQSEEQD-CPIMLVDLVLLHWRN--ESLIDVVDKRLQ---NEYNIDEACLALKLGL 604
Query: 273 LCTLPDPESRPNMNEVLSAL 214
LC+ P +RPNM +V+ L
Sbjct: 605 LCSHSLPSARPNMRQVMQFL 624
>ref|NP_565084.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g74360.1 [Arabidopsis thaliana]
Length = 1106
Score = 43.1 bits (100), Expect = 0.001
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Frame = -3
Query: 387 RALANGTEQLVNIVDPMLTCNVTEYH-------------VEVLTELIKLSLLCTLPDPES 247
RA+ G E LV ++T N+T E +TEL+K+ + CT P++
Sbjct: 1015 RAVDGGEECLVEWARRVMTGNMTAKGSPITLSGTKPGNGAEQMTELLKIGVKCTADHPQA 1074
Query: 246 RPNMNEVLSALMKL 205
RPNM EVL+ L+K+
Sbjct: 1075 RPNMKEVLAMLVKI 1088
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,631,783
Number of Sequences: 1393205
Number of extensions: 6727459
Number of successful extensions: 19171
Number of sequences better than 10.0: 352
Number of HSP's better than 10.0 without gapping: 18638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19163
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
