Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004882A_C02 KMC004882A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersic... 61 1e-08
ref|NP_568001.1| glycosyl hydrolase family 35 (beta-galactosidas... 60 3e-08
pir||B85429 beta-galactosidase like protein [imported] - Arabido... 60 3e-08
pir||T04600 probable beta-galactosidase (EC 3.2.1.23) F23E13.200... 60 3e-08
gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera] 55 5e-07
>gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersicon esculentum]
Length = 845
Score = 60.8 bits (146), Expect = 1e-08
Identities = 25/31 (80%), Positives = 29/31 (92%)
Frame = -2
Query: 576 CIVTVTNSNFGQDPCPNVMKRLSVEAVCTPT 484
C VT++NSNFG+DPCPNV+KRLSVEA CTPT
Sbjct: 813 CAVTISNSNFGEDPCPNVLKRLSVEAHCTPT 843
>ref|NP_568001.1| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At4g36360.1, supported by cDNA: gi_15810492, supported
by cDNA: gi_20259270 [Arabidopsis thaliana]
gi|6686878|emb|CAB64739.1| putative beta-galactosidase
[Arabidopsis thaliana] gi|15810493|gb|AAL07134.1|
putative beta-galactosidase [Arabidopsis thaliana]
gi|20259271|gb|AAM14371.1| putative beta-galactosidase
[Arabidopsis thaliana]
Length = 856
Score = 59.7 bits (143), Expect = 3e-08
Identities = 25/39 (64%), Positives = 32/39 (81%), Gaps = 4/39 (10%)
Frame = -2
Query: 579 KCIVTVTNSNFGQDPCPNVMKRLSVEAVCTP----TNWR 475
+C VT++NSNFG+DPCPNV+KRL+VEAVC P + WR
Sbjct: 817 RCAVTISNSNFGKDPCPNVLKRLTVEAVCAPETSVSTWR 855
>pir||B85429 beta-galactosidase like protein [imported] - Arabidopsis thaliana
gi|4006924|emb|CAB16852.1| beta-galactosidase like
protein [Arabidopsis thaliana]
gi|7270584|emb|CAB80302.1| beta-galactosidase like
protein [Arabidopsis thaliana]
Length = 853
Score = 59.7 bits (143), Expect = 3e-08
Identities = 25/39 (64%), Positives = 32/39 (81%), Gaps = 4/39 (10%)
Frame = -2
Query: 579 KCIVTVTNSNFGQDPCPNVMKRLSVEAVCTP----TNWR 475
+C VT++NSNFG+DPCPNV+KRL+VEAVC P + WR
Sbjct: 814 RCAVTISNSNFGKDPCPNVLKRLTVEAVCAPETSVSTWR 852
>pir||T04600 probable beta-galactosidase (EC 3.2.1.23) F23E13.200 - Arabidopsis
thaliana gi|2961390|emb|CAA18137.1| beta-galactosidase
like protein [Arabidopsis thaliana]
Length = 853
Score = 59.7 bits (143), Expect = 3e-08
Identities = 25/39 (64%), Positives = 32/39 (81%), Gaps = 4/39 (10%)
Frame = -2
Query: 579 KCIVTVTNSNFGQDPCPNVMKRLSVEAVCTP----TNWR 475
+C VT++NSNFG+DPCPNV+KRL+VEAVC P + WR
Sbjct: 814 RCAVTISNSNFGKDPCPNVLKRLTVEAVCAPETSVSTWR 852
>gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera]
Length = 854
Score = 55.5 bits (132), Expect = 5e-07
Identities = 23/32 (71%), Positives = 27/32 (83%)
Frame = -2
Query: 579 KCIVTVTNSNFGQDPCPNVMKRLSVEAVCTPT 484
KC V ++NS FG DPCPNV+KRLSVEA C+PT
Sbjct: 813 KCSVPISNSYFGADPCPNVLKRLSVEAACSPT 844
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,141,238
Number of Sequences: 1393205
Number of extensions: 10425707
Number of successful extensions: 20390
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 19917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20380
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
