Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004874A_C01 KMC004874A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM14063.1| putative cullin [Arabidopsis thaliana] 162 2e-39
ref|NP_568658.1| cullin; protein id: At5g46210.1, supported by c... 162 2e-39
dbj|BAB08502.1| cullin [Arabidopsis thaliana] 162 2e-39
pir||T07163 probable cullin protein - tomato gi|3687389|emb|CAA7... 156 2e-37
gb|AAL27655.2| putative cullin protein [Olea europaea] 154 4e-37
>gb|AAM14063.1| putative cullin [Arabidopsis thaliana]
Length = 792
Score = 162 bits (411), Expect = 2e-39
Identities = 81/86 (94%), Positives = 85/86 (98%)
Frame = -1
Query: 518 LKETVEVNTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 339
+KETVE NTSTTERVFQDRQYQ+DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK
Sbjct: 707 MKETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 766
Query: 338 KRIESLIDREYLERDKNNPQIYNYLA 261
KRIESLIDREYLER+K+NPQIYNYLA
Sbjct: 767 KRIESLIDREYLEREKSNPQIYNYLA 792
>ref|NP_568658.1| cullin; protein id: At5g46210.1, supported by cDNA: 101723.,
supported by cDNA: gi_20268718 [Arabidopsis thaliana]
gi|21536527|gb|AAM60859.1| cullin [Arabidopsis thaliana]
Length = 792
Score = 162 bits (411), Expect = 2e-39
Identities = 81/86 (94%), Positives = 85/86 (98%)
Frame = -1
Query: 518 LKETVEVNTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 339
+KETVE NTSTTERVFQDRQYQ+DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK
Sbjct: 707 MKETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 766
Query: 338 KRIESLIDREYLERDKNNPQIYNYLA 261
KRIESLIDREYLER+K+NPQIYNYLA
Sbjct: 767 KRIESLIDREYLEREKSNPQIYNYLA 792
>dbj|BAB08502.1| cullin [Arabidopsis thaliana]
Length = 617
Score = 162 bits (411), Expect = 2e-39
Identities = 81/86 (94%), Positives = 85/86 (98%)
Frame = -1
Query: 518 LKETVEVNTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 339
+KETVE NTSTTERVFQDRQYQ+DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK
Sbjct: 532 MKETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 591
Query: 338 KRIESLIDREYLERDKNNPQIYNYLA 261
KRIESLIDREYLER+K+NPQIYNYLA
Sbjct: 592 KRIESLIDREYLEREKSNPQIYNYLA 617
>pir||T07163 probable cullin protein - tomato gi|3687389|emb|CAA76074.1|
putative cullin protein [Lycopersicon esculentum]
Length = 615
Score = 156 bits (394), Expect = 2e-37
Identities = 80/86 (93%), Positives = 82/86 (95%)
Frame = -1
Query: 518 LKETVEVNTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 339
+KETVE NTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFP K + LK
Sbjct: 530 MKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPNKTSYLK 589
Query: 338 KRIESLIDREYLERDKNNPQIYNYLA 261
KRIESLIDREYLERDKNNPQIYNYLA
Sbjct: 590 KRIESLIDREYLERDKNNPQIYNYLA 615
>gb|AAL27655.2| putative cullin protein [Olea europaea]
Length = 816
Score = 154 bits (390), Expect = 4e-37
Identities = 78/86 (90%), Positives = 81/86 (93%)
Frame = -1
Query: 518 LKETVEVNTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK 339
+KETVE N STTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK P K +DLK
Sbjct: 731 MKETVEENASTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKVPHKTSDLK 790
Query: 338 KRIESLIDREYLERDKNNPQIYNYLA 261
KRIESLIDREYLERDKNNPQ+YNYLA
Sbjct: 791 KRIESLIDREYLERDKNNPQVYNYLA 816
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,668,037
Number of Sequences: 1393205
Number of extensions: 11022123
Number of successful extensions: 54421
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 37706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51770
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
