Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004872A_C01 KMC004872A_c01
(348 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174702.1| hypothetical protein; protein id: At1g34420.1 [... 50 7e-06
ref|NP_181713.1| leucine-rich repeat transmembrane protein kinas... 42 0.003
dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica ... 40 0.006
ref|NP_196135.1| leucine-rich repeat transmembrane protein kinas... 39 0.013
ref|NP_564228.1| leucine-rich repeat transmembrane protein kinas... 38 0.029
>ref|NP_174702.1| hypothetical protein; protein id: At1g34420.1 [Arabidopsis thaliana]
gi|8778255|gb|AAF79264.1|AC023279_13 F12K21.25
[Arabidopsis thaliana]
gi|12323858|gb|AAG51899.1|AC023913_7 hypothetical
protein; 24606-21623 [Arabidopsis thaliana]
Length = 966
Score = 50.1 bits (118), Expect = 7e-06
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = -3
Query: 340 SRTSQACRNQMLATLKIALGCVSTSPEARPKMKTVLRML 224
S+TS QML L +AL C++ SP ARPKMKTVLRML
Sbjct: 925 SKTSTVATKQMLRALGVALACINISPGARPKMKTVLRML 963
>ref|NP_181713.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g41820.1 [Arabidopsis thaliana]
gi|25408756|pir||E84846 probable receptor-like protein
kinase [imported] - Arabidopsis thaliana
gi|2335097|gb|AAC02766.1| putative receptor-like protein
kinase [Arabidopsis thaliana]
Length = 890
Score = 41.6 bits (96), Expect = 0.003
Identities = 21/39 (53%), Positives = 25/39 (63%)
Frame = -3
Query: 340 SRTSQACRNQMLATLKIALGCVSTSPEARPKMKTVLRML 224
S S A R +MLA LK+AL C +P RPKMK V+ ML
Sbjct: 845 STVSFAWRREMLAALKVALLCTDITPAKRPKMKKVVEML 883
>dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711799|dbj|BAB07903.1| putative receptor kinase
[Oryza sativa (japonica cultivar-group)]
Length = 641
Score = 40.4 bits (93), Expect = 0.006
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -3
Query: 313 QMLATLKIALGCVSTSPEARPKMKTVLRMLLNAR*NHTHHR 191
+M+ L+IA+ CVS +PE RPKM V+RML + R T R
Sbjct: 578 EMVEMLQIAMACVSRTPERRPKMSDVVRMLEDVRRTDTGTR 618
>ref|NP_196135.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g05160.1 [Arabidopsis thaliana]
gi|9759257|dbj|BAB09692.1| receptor-like protein kinase
[Arabidopsis thaliana]
Length = 640
Score = 39.3 bits (90), Expect = 0.013
Identities = 17/39 (43%), Positives = 27/39 (68%)
Frame = -3
Query: 328 QACRNQMLATLKIALGCVSTSPEARPKMKTVLRMLLNAR 212
Q +M+ L++AL CV+ +PE+RPKM+ V RM+ + R
Sbjct: 579 QNIEEEMVQMLQLALACVARNPESRPKMEEVARMIEDVR 617
>ref|NP_564228.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g25320.1, supported by cDNA: gi_15912326
[Arabidopsis thaliana] gi|25511663|pir||A86383 76.4K
protein kinase homolog F4F7.29 - Arabidopsis thaliana
gi|11067286|gb|AAG28814.1|AC079374_17 unknown protein
[Arabidopsis thaliana] gi|15912327|gb|AAL08297.1|
At1g25320/F4F7_17 [Arabidopsis thaliana]
Length = 702
Score = 38.1 bits (87), Expect = 0.029
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -3
Query: 313 QMLATLKIALGCVSTSPEARPKMKTV 236
+++A LKIA+ CVSTSPE RP MK +
Sbjct: 667 EVIAVLKIAMACVSTSPEKRPPMKHI 692
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,580,968
Number of Sequences: 1393205
Number of extensions: 4797618
Number of successful extensions: 9988
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 9850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9986
length of database: 448,689,247
effective HSP length: 91
effective length of database: 321,907,592
effective search space used: 7725782208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
