Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004869A_C01 KMC004869A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680446.1| Expressed protein; protein id: At5g56890.1, sup... 37 0.22
gb|AAM19822.1| At5g56885 [Arabidopsis thaliana] gi|25090425|gb|A... 37 0.22
dbj|BAB16871.1| putative protein kinase APK1AArabidopsis thalian... 33 2.4
>ref|NP_680446.1| Expressed protein; protein id: At5g56890.1, supported by cDNA:
gi_20453161 [Arabidopsis thaliana]
Length = 1113
Score = 37.0 bits (84), Expect = 0.22
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -3
Query: 635 KNSYSEPLRSERSTRLWKIIRRLSGGSASEHGT 537
+ S S PL S R W+ +RRLS GS SEHGT
Sbjct: 1071 RQSNSGPLTSGRGKSFWQKMRRLSTGSLSEHGT 1103
>gb|AAM19822.1| At5g56885 [Arabidopsis thaliana] gi|25090425|gb|AAN72298.1|
At5g56885/At5g56885 [Arabidopsis thaliana]
Length = 1113
Score = 37.0 bits (84), Expect = 0.22
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -3
Query: 635 KNSYSEPLRSERSTRLWKIIRRLSGGSASEHGT 537
+ S S PL S R W+ +RRLS GS SEHGT
Sbjct: 1071 RQSNSGPLTSGRGKSFWQKMRRLSTGSLSEHGT 1103
>dbj|BAB16871.1| putative protein kinase APK1AArabidopsis thaliana [Oryza sativa
(japonica cultivar-group)] gi|14646774|dbj|BAB61937.1|
putative protein kinase APK1AArabidopsis thaliana [Oryza
sativa (japonica cultivar-group)]
Length = 1014
Score = 33.5 bits (75), Expect = 2.4
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = -3
Query: 635 KNSYSEPLRSERSTRLWKIIRRLSGGSASEHG 540
K S S PL + ++ + W+ +R LS GS SEHG
Sbjct: 938 KQSSSGPLMTGKNRKFWQRLRSLSRGSMSEHG 969
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,550,826
Number of Sequences: 1393205
Number of extensions: 12372939
Number of successful extensions: 21582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21576
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
