Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004859A_C01 KMC004859A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190356.1| putative protein; protein id: At3g47720.1 [Arab... 37 0.13
ref|NP_572403.1| CG12155-PA [Drosophila melanogaster] gi|7290826... 29 0.37
ref|XP_145404.1| similar to C5a anaphylatoxin chemotactic recept... 35 0.81
pir||A56235 transcription activator MafB - chicken gi|516724|dbj... 28 1.1
emb|CAA65360.1| MAFB protein [Coturnix japonica] 28 1.7
>ref|NP_190356.1| putative protein; protein id: At3g47720.1 [Arabidopsis thaliana]
gi|7487375|pir||T07711 hypothetical protein T23J7.50 -
Arabidopsis thaliana gi|4741189|emb|CAB41855.1| putative
protein [Arabidopsis thaliana]
Length = 326
Score = 37.4 bits (85), Expect = 0.13
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = -2
Query: 558 EMKISRQQMIQKLRVIAGDKFLFQVIKSFREKLQK 454
+ +ISR ++IQ+LR I GD L Q+IKS +K+ K
Sbjct: 290 DRRISRCELIQRLRSITGDSLLVQIIKSVGQKVHK 324
>ref|NP_572403.1| CG12155-PA [Drosophila melanogaster] gi|7290826|gb|AAF46269.1|
CG12155-PA [Drosophila melanogaster]
gi|17863012|gb|AAL39983.1| SD08447p [Drosophila
melanogaster]
Length = 555
Score = 29.3 bits (64), Expect(2) = 0.37
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1
Query: 49 EHNMSTINAPFGSELFQYIICSTKYYSQLKYRE-----TILVHHHYHHH 180
+H+ +T+++ G+ + + + Y E T+ HHH+HHH
Sbjct: 172 DHDTATLSSHHGTSQITLVSDEAETFILTAYEEGVSDDTVSQHHHHHHH 220
Score = 25.4 bits (54), Expect(2) = 0.37
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 160 HHHYHHHKTCITQKKVSNVAL 222
HHH+HHH +S++ L
Sbjct: 233 HHHHHHHHQSQHDGSISSIEL 253
>ref|XP_145404.1| similar to C5a anaphylatoxin chemotactic receptor C5L2 [Mus
musculus] gi|28477191|ref|XP_284268.1| RIKEN cDNA
E030029A11 gene [Mus musculus]
gi|28892701|ref|NP_795886.1| RIKEN cDNA E030029A11 gene
[Mus musculus] gi|26343293|dbj|BAC35303.1| unnamed
protein product [Mus musculus]
Length = 344
Score = 34.7 bits (78), Expect = 0.81
Identities = 26/79 (32%), Positives = 39/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 214 VALLLTVAF-----LLNE*LV*ALLCQLKHNNALL*ETKRTQYRELFI---PLCWLSGCH 369
+ LLLTV LL E L+C + + ++ E T R LF PL +++GCH
Sbjct: 167 LGLLLTVPSAVYRRLLQEHYPPRLVCGIDYGGSVSAEVAITTVRFLFGFLGPLVFMAGCH 226
Query: 370 SLSLLQLAVGGWPLPVAIL 426
+ Q+A WPL A++
Sbjct: 227 GILQRQMARRHWPLGTAVV 245
>pir||A56235 transcription activator MafB - chicken gi|516724|dbj|BAA05938.1|
MafB [Gallus gallus]
Length = 311
Score = 28.1 bits (61), Expect(2) = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 103 IICSTKYYSQLKYRETILVHHHYHHH 180
+I S + QL+ E+ HHH+HHH
Sbjct: 111 LIGSHQVSQQLQGFESFRAHHHHHHH 136
Score = 25.0 bits (53), Expect(2) = 1.1
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +1
Query: 160 HHHYHHHKTCITQKKVSN 213
HHH+HHH+ T S+
Sbjct: 160 HHHHHHHQASPTPSTSSS 177
>emb|CAA65360.1| MAFB protein [Coturnix japonica]
Length = 311
Score = 28.1 bits (61), Expect(2) = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 103 IICSTKYYSQLKYRETILVHHHYHHH 180
+I S + QL+ E+ HHH+HHH
Sbjct: 111 LIGSHQVSQQLQGFESFRAHHHHHHH 136
Score = 24.3 bits (51), Expect(2) = 1.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 160 HHHYHHHKTCITQKKVSN 213
HHH+HHH T S+
Sbjct: 160 HHHHHHHHASPTPSTSSS 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,561,410
Number of Sequences: 1393205
Number of extensions: 10097116
Number of successful extensions: 31022
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28698
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
