Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004854A_C01 KMC004854A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568197.1| putative protein; protein id: At5g08440.1, supp... 33 1.9
>ref|NP_568197.1| putative protein; protein id: At5g08440.1, supported by cDNA:
gi_13877640, supported by cDNA: gi_20148706 [Arabidopsis
thaliana] gi|13877641|gb|AAK43898.1|AF370521_1 putative
protein [Arabidopsis thaliana]
gi|20148707|gb|AAM10244.1| putative protein [Arabidopsis
thaliana]
Length = 541
Score = 33.5 bits (75), Expect = 1.9
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 244 LTFNETNIQQTELEQAIILRVQQNVQEYKTGSPLL**IVRGTGQFYKEATDNQHVVQSRY 423
L ET +++TE + L Q+ + SPL G G Y +TD++H Q R
Sbjct: 345 LNVTETKLKETEYQ----LAPWQSDVNHSNASPLSPYQPVGVGLRY--STDSEHHHQDRR 398
Query: 424 GGSFP*INYHVKWEETRHP---IPIQ 492
GGS NYH+ E+R P +P+Q
Sbjct: 399 GGSAA-SNYHLDGPESRSPAFQMPVQ 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,946,851
Number of Sequences: 1393205
Number of extensions: 10725085
Number of successful extensions: 22213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22209
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
