Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004844A_C01 KMC004844A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65390.1| OJ1349_D05.11 [Oryza sativa (japonica cultivar-g... 65 7e-10
ref|XP_138210.1| similar to neurexin 3-alpha [Homo sapiens] [Mus... 32 8.9
gb|AAN71522.1| RH09189p [Drosophila melanogaster] 32 8.9
ref|NP_766132.1| neurexin III; neurexin III beta; neurexin III a... 32 8.9
>dbj|BAC65390.1| OJ1349_D05.11 [Oryza sativa (japonica cultivar-group)]
Length = 1149
Score = 65.1 bits (157), Expect = 7e-10
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Frame = -3
Query: 626 FTSSTDDQQLQDFLVKKAPFLEDWFKGLCSSVESTLD--VQDKSIADR--------KKAM 477
F S DDQ L+DFL+KKA FLEDW K L S + D + +++I D +KAM
Sbjct: 1057 FVSPKDDQSLRDFLIKKASFLEDWLKSLFSLFNNVEDQPLANEAINDEDGFSPNVAQKAM 1116
Query: 476 ISSAIGSLIEVCQEKPQDAFAQKFEEL 396
+SSA+ SL+++ + Q AQ+FE+L
Sbjct: 1117 LSSAVKSLLDIYTSENQHTVAQRFEQL 1143
>ref|XP_138210.1| similar to neurexin 3-alpha [Homo sapiens] [Mus musculus]
Length = 556
Score = 31.6 bits (70), Expect = 8.9
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +1
Query: 340 KTDYMNHCLFTLHLYTPFFNSSNF*ANASCGFSWHTSI--NDPIALDIM-AFFRSAMDLS 510
K+ Y+ L TL YT F ++ GF S ND IA++++ + DL
Sbjct: 163 KSSYLT--LATLQAYTSMHLFFQFKTTSADGFILFNSGDGNDFIAVELVKGYIHYVFDLG 220
Query: 511 *TSSVLSTDEHSPLNQSSRNGAFLTRKSCNC*SSVLDVK 627
+V+ + PLN + + +TR S N S +D K
Sbjct: 221 NGPNVIKGNSDRPLNDNQWHNVVITRDSSNTHSLKVDTK 259
>gb|AAN71522.1| RH09189p [Drosophila melanogaster]
Length = 758
Score = 31.6 bits (70), Expect = 8.9
Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 5/48 (10%)
Frame = -1
Query: 607 INSCKIF*SRKHRFLKIGSRDYAHL-----LRAHLMFKISPLQTERKP 479
+ SC+ F R+HR L+ G D L RAHL+ ++ P Q RKP
Sbjct: 25 LRSCRTFCQRQHRLLRGG--DVQRLASGSHFRAHLLGRVLPQQQLRKP 70
>ref|NP_766132.1| neurexin III; neurexin III beta; neurexin III alpha [Mus musculus]
gi|26327951|dbj|BAC27716.1| unnamed protein product [Mus
musculus]
Length = 1100
Score = 31.6 bits (70), Expect = 8.9
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +1
Query: 340 KTDYMNHCLFTLHLYTPFFNSSNF*ANASCGFSWHTSI--NDPIALDIM-AFFRSAMDLS 510
K+ Y+ L TL YT F ++ GF S ND IA++++ + DL
Sbjct: 505 KSSYLT--LATLQAYTSMHLFFQFKTTSADGFILFNSGDGNDFIAVELVKGYIHYVFDLG 562
Query: 511 *TSSVLSTDEHSPLNQSSRNGAFLTRKSCNC*SSVLDVK 627
+V+ + PLN + + +TR S N S +D K
Sbjct: 563 NGPNVIKGNSDRPLNDNQWHNVVITRDSSNTHSLKVDTK 601
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,281,591
Number of Sequences: 1393205
Number of extensions: 10717583
Number of successful extensions: 21563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21561
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
