Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004842A_C01 KMC004842A_c01
(364 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putati... 32 1.5
gb|EAA17815.1| hypothetical protein [Plasmodium yoelii yoelii] 32 2.6
ref|XP_147302.1| hypothetical protein XP_147302 [Mus musculus] 32 2.6
ref|NP_704165.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.5
gb|AAO32362.1| ARE1 [Saccharomyces bayanus] 30 5.9
>gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
yoelii yoelii]
Length = 1323
Score = 32.3 bits (72), Expect = 1.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 184 TRLNNKTIRCKKNFNHMPHEKKKKKTNL 267
T ++NK I KN+N + EKKKKK N+
Sbjct: 69 TNIHNKNIGGDKNYNSLNSEKKKKKINI 96
>gb|EAA17815.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2170
Score = 31.6 bits (70), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (45%)
Frame = +3
Query: 111 YNNQFVMQHNRGIKNNSK*HQATTNSLKQQNYSVQEKLQSYAP*EEKKKNKSSPVVCSSI 290
Y N+ +++ N IKNNSK NYS+ EK ++ K K + +
Sbjct: 1204 YKNKVIVEKNEAIKNNSK------------NYSIYEKYYNFMENLVYKILKKTKYFDNKH 1251
Query: 291 LDVSCIFLM 317
LD+ IFL+
Sbjct: 1252 LDILFIFLI 1260
>ref|XP_147302.1| hypothetical protein XP_147302 [Mus musculus]
Length = 137
Score = 31.6 bits (70), Expect = 2.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -1
Query: 199 CCLSELVVAWCYLELFFIPRLCCITNWLL---YRSMLDADYI 83
CC + ++ C+LEL+ + R CC L+ Y+S + YI
Sbjct: 45 CCSDPIYLSLCHLELYSLTRFCCCKTVLMNTKYQSEIGGLYI 86
>ref|NP_704165.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498903|emb|CAD50981.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1422
Score = 30.8 bits (68), Expect = 4.5
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 5/86 (5%)
Frame = +3
Query: 114 NNQFVMQHNRGI-----KNNSK*HQATTNSLKQQNYSVQEKLQSYAP*EEKKKNKSSPVV 278
NN V+Q N+ + KNN + ++ +N ++Q + + + K+KNK+ +
Sbjct: 1334 NNNDVIQQNKNLNDLLDKNNFSYKLYLLSLMQDKNKNLQTEQLNNSDLNTKQKNKNHTLT 1393
Query: 279 CSSILDVSCIFLMLKLLNYAFSQSKC 356
+D+S I L L NY C
Sbjct: 1394 LKDKIDISSINLFF-LNNYTIKSEDC 1418
>gb|AAO32362.1| ARE1 [Saccharomyces bayanus]
Length = 623
Score = 30.4 bits (67), Expect = 5.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 263 FVFFFFFSWGI*LKFFLHRIVLLFK 189
+V++F FSW + FLH +VLL K
Sbjct: 296 YVYYFHFSWVTRIFLFLHSVVLLMK 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,916,742
Number of Sequences: 1393205
Number of extensions: 5927634
Number of successful extensions: 14084
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14070
length of database: 448,689,247
effective HSP length: 96
effective length of database: 314,941,567
effective search space used: 7558597608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
