Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004835A_C01 KMC004835A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK44146.1|AF370331_1 unknown protein [Arabidopsis thaliana] ... 93 2e-18
dbj|BAC42663.1| unknown protein [Arabidopsis thaliana] gi|284167... 85 5e-16
ref|NP_189052.1| unknown protein; protein id: At3g24100.1 [Arabi... 84 1e-15
ref|NP_732133.1| CG17931-PA [Drosophila melanogaster] gi|2339685... 47 1e-04
ref|NP_650537.1| CG17931-PB [Drosophila melanogaster] gi|2317146... 43 0.002
>gb|AAK44146.1|AF370331_1 unknown protein [Arabidopsis thaliana] gi|23296709|gb|AAN13152.1|
unknown protein [Arabidopsis thaliana]
Length = 69
Score = 93.2 bits (230), Expect = 2e-18
Identities = 48/66 (72%), Positives = 53/66 (79%)
Frame = -1
Query: 432 MTRGSQRDRDRERAQSRTGGKQAKGKNDGLTPEQRRERDAKALQEKTAKKSGQQAGGDDA 253
MTRGSQR+RDRERA +RTGGK K K+DGLTPEQRRERDAKALQEKTAKK+ Q A +
Sbjct: 1 MTRGSQRERDRERALARTGGK-GKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASS 59
Query: 252 AGGSKK 235
GG K
Sbjct: 60 GGGGGK 65
>dbj|BAC42663.1| unknown protein [Arabidopsis thaliana] gi|28416731|gb|AAO42896.1|
At4g13612 [Arabidopsis thaliana]
Length = 71
Score = 85.1 bits (209), Expect = 5e-16
Identities = 46/65 (70%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Frame = -1
Query: 432 MTRGSQRDRDRERAQSRTGGKQAKGKNDGLTPEQRRERDAKALQEKTAKKSGQQAGGDD- 256
MTRGSQR+RDRERA +R GGK G +DGLTPEQRRERD KALQEK AKK+ Q AG
Sbjct: 1 MTRGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQEKAAKKAAQAAGASSG 59
Query: 255 -AAGG 244
AAGG
Sbjct: 60 GAAGG 64
>ref|NP_189052.1| unknown protein; protein id: At3g24100.1 [Arabidopsis thaliana]
Length = 85
Score = 83.6 bits (205), Expect = 1e-15
Identities = 43/61 (70%), Positives = 48/61 (78%)
Frame = -1
Query: 417 QRDRDRERAQSRTGGKQAKGKNDGLTPEQRRERDAKALQEKTAKKSGQQAGGDDAAGGSK 238
QR+RDRERA +RTGGK K K+DGLTPEQRRERDAKALQEKTAKK+ Q A + GG
Sbjct: 22 QRERDRERALARTGGK-GKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGGGGG 80
Query: 237 K 235
K
Sbjct: 81 K 81
>ref|NP_732133.1| CG17931-PA [Drosophila melanogaster]
gi|23396857|sp|Q9VEW2|SERL_DROME Putative SERF-like
protein gi|7300138|gb|AAF55305.1| CG17931-PA [Drosophila
melanogaster]
Length = 60
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -1
Query: 432 MTRGSQRDRDRERAQSRTGGKQAKGKNDGLTPEQRRERDAKALQEKTAKKSGQQAGG 262
MTRG+QRD R++ Q + + D LT EQR+ RDA+ ++EK KK A G
Sbjct: 1 MTRGNQRDLARQKNQKKQADLTKGKRTDNLTVEQRKARDAELMREKQKKKEEAAAAG 57
>ref|NP_650537.1| CG17931-PB [Drosophila melanogaster] gi|23171464|gb|AAN13706.1|
CG17931-PB [Drosophila melanogaster]
Length = 60
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/57 (38%), Positives = 31/57 (53%)
Frame = -1
Query: 432 MTRGSQRDRDRERAQSRTGGKQAKGKNDGLTPEQRRERDAKALQEKTAKKSGQQAGG 262
M G+QRD R++ Q + + D LT EQR+ RDA+ ++EK KK A G
Sbjct: 1 MVSGNQRDLARQKNQKKQADLTKGKRTDNLTVEQRKARDAELMREKQKKKEEAAAAG 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,736,434
Number of Sequences: 1393205
Number of extensions: 9239805
Number of successful extensions: 37522
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 31755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35835
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
