Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004833A_C01 KMC004833A_c01
(723 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181713.1| leucine-rich repeat transmembrane protein kinas... 68 1e-10
ref|NP_188604.1| receptor-like protein kinase, putative; protein... 43 0.005
ref|NP_201198.1| leucine-rich repeat transmembrane protein kinas... 43 0.005
ref|NP_173166.1| putative leucine-rich receptor protein kinase; ... 42 0.007
gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cult... 42 0.007
>ref|NP_181713.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g41820.1 [Arabidopsis thaliana]
gi|25408756|pir||E84846 probable receptor-like protein
kinase [imported] - Arabidopsis thaliana
gi|2335097|gb|AAC02766.1| putative receptor-like protein
kinase [Arabidopsis thaliana]
Length = 890
Score = 67.8 bits (164), Expect = 1e-10
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = -2
Query: 722 RKEMLAALKVALLCTDNTPAKRPKMKNVVEMLQEIKQ 612
R+EMLAALKVALLCTD TPAKRPKMK VVEMLQE+KQ
Sbjct: 852 RREMLAALKVALLCTDITPAKRPKMKKVVEMLQEVKQ 888
>ref|NP_188604.1| receptor-like protein kinase, putative; protein id: At3g19700.1
[Arabidopsis thaliana] gi|25456429|pir||T52400
receptor-like protein kinase [imported] - Arabidopsis
thaliana gi|9294437|dbj|BAB02557.1| receptor-like protein
kinase [Arabidopsis thaliana]
Length = 991
Score = 42.7 bits (99), Expect = 0.005
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = -2
Query: 722 RKEMLAALKVALLCTDNTPAKRPKMKNVVEMLQEIKQS 609
+++ L L +ALLCTD +P RP MK+VV ML++I+ S
Sbjct: 932 KEDALKVLTIALLCTDKSPQARPFMKSVVSMLEKIEPS 969
>ref|NP_201198.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g63930.1 [Arabidopsis thaliana]
gi|8777306|dbj|BAA96896.1| receptor-like protein kinase
[Arabidopsis thaliana]
Length = 1102
Score = 42.7 bits (99), Expect = 0.005
Identities = 21/39 (53%), Positives = 27/39 (68%)
Frame = -2
Query: 713 MLAALKVALLCTDNTPAKRPKMKNVVEMLQEIKQS*GQQ 597
ML LK+ALLCT +P RP M+ VV ML E ++S G+Q
Sbjct: 1050 MLTVLKIALLCTSVSPVARPSMRQVVLMLIESERSEGEQ 1088
>ref|NP_173166.1| putative leucine-rich receptor protein kinase; protein id:
At1g17230.1 [Arabidopsis thaliana]
gi|25518557|pir||E86308 hypothetical protein F20D23.7 -
Arabidopsis thaliana gi|5734762|gb|AAD50027.1|AC007651_22
Similar to leucine-rich receptor-like protein kinase
[Arabidopsis thaliana]
Length = 1133
Score = 42.4 bits (98), Expect = 0.007
Identities = 19/36 (52%), Positives = 24/36 (65%)
Frame = -2
Query: 716 EMLAALKVALLCTDNTPAKRPKMKNVVEMLQEIKQS 609
EM LK+AL CT N+PA RP M+ VV M+ E + S
Sbjct: 1043 EMSLVLKIALFCTSNSPASRPTMREVVAMITEARGS 1078
>gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1030
Score = 42.4 bits (98), Expect = 0.007
Identities = 20/36 (55%), Positives = 26/36 (71%)
Frame = -2
Query: 722 RKEMLAALKVALLCTDNTPAKRPKMKNVVEMLQEIK 615
R+EML L+VA+LCT +P RP M++VV ML E K
Sbjct: 964 REEMLLVLRVAVLCTAKSPKDRPTMRDVVTMLGEAK 999
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,173,907
Number of Sequences: 1393205
Number of extensions: 12587764
Number of successful extensions: 27488
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 26633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27481
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
