Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004829A_C01 KMC004829A_c01
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566340.1| expressed protein; protein id: At3g09000.1, sup... 75 1e-12
ref|NP_195748.1| putative protein; protein id: At5g01280.1 [Arab... 46 6e-04
ref|NP_187479.1| hypothetical protein; protein id: At3g08670.1 [... 44 0.002
dbj|BAB62592.1| P0454H12.25 [Oryza sativa (japonica cultivar-gro... 39 0.053
gb|EAA12308.1| agCP11053 [Anopheles gambiae str. PEST] 35 1.3
>ref|NP_566340.1| expressed protein; protein id: At3g09000.1, supported by cDNA:
gi_16226224 [Arabidopsis thaliana]
gi|5923665|gb|AAD56316.1|AC009326_3 hypothetical protein
[Arabidopsis thaliana]
gi|6403487|gb|AAF07827.1|AC010871_3 hypothetical protein
[Arabidopsis thaliana]
gi|16226225|gb|AAL16108.1|AF428276_1 AT3g09000/T16O11_4
[Arabidopsis thaliana] gi|23397207|gb|AAN31886.1|
unknown protein [Arabidopsis thaliana]
Length = 541
Score = 74.7 bits (182), Expect = 1e-12
Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Frame = -2
Query: 694 SKKSLDMAIRHMDIRQRAPGNLRRPLMTNIPASSMYSVRSSPRHSQTVSYSGSPHATSSN 515
SK S+DMAIRHMDIR+ GNL RPL+T +PASSMYSVRS P S S SP ATSS
Sbjct: 443 SKSSIDMAIRHMDIRRGMTGNL-RPLVTKVPASSMYSVRSRPG-----SVSSSPVATSST 496
Query: 514 -AGSEVSVDP-NGLCI-YNETD-DDIVGER 437
+ S+ SVD N LC+ NE + DD++ ER
Sbjct: 497 VSSSDPSVDNINILCLDGNEAENDDLLSER 526
>ref|NP_195748.1| putative protein; protein id: At5g01280.1 [Arabidopsis thaliana]
gi|11357839|pir||T45968 hypothetical protein F7J8.260 -
Arabidopsis thaliana gi|6759451|emb|CAB69856.1| putative
protein [Arabidopsis thaliana]
Length = 460
Score = 45.8 bits (107), Expect = 6e-04
Identities = 31/80 (38%), Positives = 42/80 (51%)
Frame = -2
Query: 694 SKKSLDMAIRHMDIRQRAPGNLRRPLMTNIPASSMYSVRSSPRHSQTVSYSGSPHATSSN 515
SK S+DMA+RHMD+R+ + R +T PA+S+YSVRS SS+
Sbjct: 387 SKSSIDMALRHMDVRKGSMAGNFRHSVTKAPATSVYSVRSCRN-----------RPVSSS 435
Query: 514 AGSEVSVDPNGLCIYNETDD 455
SE SV N LC+ D+
Sbjct: 436 RSSESSV--NILCLDGSDDN 453
>ref|NP_187479.1| hypothetical protein; protein id: At3g08670.1 [Arabidopsis
thaliana] gi|12322732|gb|AAG51356.1|AC012562_17
hypothetical protein; 44869-47459 [Arabidopsis thaliana]
Length = 567
Score = 44.3 bits (103), Expect = 0.002
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -2
Query: 694 SKKSLDMAIRHMDIRQRAPGNLRRPLMTNIP------ASSMYSVRSSPRHSQTVSYSGSP 533
SK SLDMAIRHMDIR T P +S + +RS HS ++S +G+
Sbjct: 438 SKSSLDMAIRHMDIRNGKTNGCALSTTTLFPQSIRPASSKIQPIRSGNNHSDSISSNGTE 497
Query: 532 HATSSNAGSEVSVDPNGLCIYNETDDD 452
+ +N G + + + +Y + D
Sbjct: 498 NGNEANEGRRLMGKLSDMDMYESSRYD 524
>dbj|BAB62592.1| P0454H12.25 [Oryza sativa (japonica cultivar-group)]
gi|21104780|dbj|BAB93367.1| OJ1529_G03.3 [Oryza sativa
(japonica cultivar-group)]
Length = 398
Score = 39.3 bits (90), Expect = 0.053
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -2
Query: 694 SKKSLDMAIRHMDIRQRAPG----NLRRPLMTNIPASSMYSVRSSPRHSQTVSYSGSPHA 527
S+KSLDMAI+HMDIRQ G +L P + + A + S P H +S +G H
Sbjct: 249 SRKSLDMAIKHMDIRQNLGGIRGASLFPPSIRSAGAKVRSARMSDPAH---LSLNGDCHF 305
Query: 526 TSSNA-GSEVSVDPNG 482
T + + S D NG
Sbjct: 306 TDNGSINGHFSGDSNG 321
>gb|EAA12308.1| agCP11053 [Anopheles gambiae str. PEST]
Length = 1877
Score = 34.7 bits (78), Expect = 1.3
Identities = 29/92 (31%), Positives = 42/92 (45%)
Frame = -2
Query: 604 PASSMYSVRSSPRHSQTVSYSGSPHATSSNAGSEVSVDPNGLCIYNETDDDIVGERGDRS 425
PAS Y ++SP +S T S S SP + + GS + G Y++T S
Sbjct: 1763 PASPQYG-QASPNYSPT-SPSYSPSSPQHSPGSSSNHYSIGSSSYSQTPAPYSPNMSSYS 1820
Query: 424 PSTCSIQVNSSHFGESSPTF*WHNPS*PEFQP 329
PS+ S + SSPT+ +PS P + P
Sbjct: 1821 PSSPKYSPTSPVYTSSSPTY---SPSSPAYSP 1849
Score = 32.7 bits (73), Expect = 4.9
Identities = 25/92 (27%), Positives = 40/92 (43%)
Frame = -2
Query: 604 PASSMYSVRSSPRHSQTVSYSGSPHATSSNAGSEVSVDPNGLCIYNETDDDIVGERGDRS 425
P S YS S + SYS S + S + S P+ Y+ T + S
Sbjct: 1659 PTSPSYSPSSPVFSPTSPSYSPSSPSYSPTSPSYSPTSPS----YSPTSPNFTPVTPSYS 1714
Query: 424 PSTCSIQVNSSHFGESSPTF*WHNPS*PEFQP 329
PS+ + S H+ +SP++ +PS P++ P
Sbjct: 1715 PSSPNYSPTSPHYSPASPSY---SPSSPKYSP 1743
Score = 32.0 bits (71), Expect = 8.4
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Frame = -2
Query: 604 PASSMYSVRSSPRHSQTV--------SYSGSPHATSSNAGSEVSVDPNGLCIYNETDDDI 449
PAS YS SSP++S T SY GSPH T ++ PN Y+ T
Sbjct: 1729 PASPSYSP-SSPKYSPTSPSYSPTSPSYIGSPHYTPASP-QYGQASPN----YSPTSPSY 1782
Query: 448 VGERGDRSPSTCS--IQVNSSHFGES----SPTF*WHNPS*PEFQP 329
SP + S + SS + ++ SP ++PS P++ P
Sbjct: 1783 SPSSPQHSPGSSSNHYSIGSSSYSQTPAPYSPNMSSYSPSSPKYSP 1828
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,537,295
Number of Sequences: 1393205
Number of extensions: 13184976
Number of successful extensions: 32228
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 30441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32138
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
