Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004826A_C01 KMC004826A_c01
(896 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594262.1| putative transporter [Schizosaccharomyces pombe... 33 4.5
>ref|NP_594262.1| putative transporter [Schizosaccharomyces pombe]
gi|7493104|pir||T37847 probable transporter - fission
yeast (Schizosaccharomyces pombe)
gi|2408028|emb|CAB16226.1| putative transporter
[Schizosaccharomyces pombe]
Length = 325
Score = 33.5 bits (75), Expect = 4.5
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = +2
Query: 407 YPHNKLAYQSASIYNHKKFVESINISVDTSQPAKLPIRVSCTVL 538
Y K+A ++++ KK V+S + DT +P LP R+SC VL
Sbjct: 52 YGAGKIAQLDETVWHAKKIVDS-TLHPDTKEPVFLPFRMSCFVL 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 789,158,258
Number of Sequences: 1393205
Number of extensions: 17935361
Number of successful extensions: 38265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38249
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 49054409712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
