Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004821A_C01 KMC004821A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566302.1| expressed protein; protein id: At3g07310.1, sup... 103 1e-21
ref|NP_199670.1| putative protein; protein id: At5g48590.1, supp... 95 7e-19
ref|NP_566588.1| expressed protein; protein id: At3g17800.1, sup... 83 2e-15
gb|AAL32564.1| Unknown protein [Arabidopsis thaliana] gi|2025985... 83 2e-15
gb|AAK30572.1|AF346660_1 unknown [Brassica napus] 83 2e-15
>ref|NP_566302.1| expressed protein; protein id: At3g07310.1, supported by cDNA:
37200., supported by cDNA: gi_14596186 [Arabidopsis
thaliana] gi|6041833|gb|AAF02142.1|AC009853_2 unknown
protein [Arabidopsis thaliana]
gi|6642634|gb|AAF20215.1|AC012395_2 unknown protein
[Arabidopsis thaliana] gi|14596187|gb|AAK68821.1|
Unknown protein [Arabidopsis thaliana]
gi|21593217|gb|AAM65166.1| unknown [Arabidopsis
thaliana] gi|22136074|gb|AAM91115.1| unknown protein
[Arabidopsis thaliana]
Length = 368
Score = 103 bits (258), Expect = 1e-21
Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
Frame = -3
Query: 548 HKTSLSYNDMCNG--LKDTIFGRLSNMPSSVGKGLIRQEEELEDLKCYVMSFHPGSLQRC 375
H+ S +D+ LK IFG + G I +++L Y+ F P +LQRC
Sbjct: 238 HQLECSLSDIHGSGYLKSPIFG----CSFTTGTAQISNKQQLRH---YISDFDPETLQRC 290
Query: 374 ARLRSKEAVNLIESYSFALFNHEGSGSVEKDDEILTSFSSLKRLVLEAVAFGSFLWETED 195
A+ R++EA NLIE S ALF G+ E D+ I+TSFSSLKRLVLEAVAFG+FLW+TE
Sbjct: 291 AKPRTEEARNLIEKQSLALF-----GTEESDETIVTSFSSLKRLVLEAVAFGTFLWDTEL 345
Query: 194 YIDMLYKLKDN 162
Y+D YKLK+N
Sbjct: 346 YVDGAYKLKEN 356
>ref|NP_199670.1| putative protein; protein id: At5g48590.1, supported by cDNA: 7891.
[Arabidopsis thaliana] gi|10177349|dbj|BAB10692.1|
gb|AAF02142.1~gene_id:K15N18.6~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|28392972|gb|AAO41921.1| unknown protein [Arabidopsis
thaliana] gi|28973189|gb|AAO63919.1| unknown protein
[Arabidopsis thaliana]
Length = 344
Score = 94.7 bits (234), Expect = 7e-19
Identities = 49/89 (55%), Positives = 64/89 (71%)
Frame = -3
Query: 428 EDLKCYVMSFHPGSLQRCARLRSKEAVNLIESYSFALFNHEGSGSVEKDDEILTSFSSLK 249
+ L+ Y+ F P L+RCA+ RS EA +LIE S ALF E S + I+TSFSSLK
Sbjct: 249 KQLRHYISEFDPKILRRCAKPRSHEAKSLIEKQSLALFGPEESSK----ESIVTSFSSLK 304
Query: 248 RLVLEAVAFGSFLWETEDYIDMLYKLKDN 162
RL+LEAVAFG+FLW+TE+Y+D +KLK+N
Sbjct: 305 RLLLEAVAFGTFLWDTEEYVDGAFKLKEN 333
>ref|NP_566588.1| expressed protein; protein id: At3g17800.1, supported by cDNA:
15577., supported by cDNA: gi_17064819, supported by
cDNA: gi_20259855, supported by cDNA: gi_20466176
[Arabidopsis thaliana] gi|9294484|dbj|BAB02703.1|
gb|AAF02142.1~gene_id:MEB5.2~similar to unknown protein
[Arabidopsis thaliana] gi|20466177|gb|AAM20406.1|
unknown protein [Arabidopsis thaliana]
Length = 421
Score = 83.2 bits (204), Expect = 2e-15
Identities = 44/89 (49%), Positives = 58/89 (64%), Gaps = 7/89 (7%)
Frame = -3
Query: 422 LKCYVMSFHPGSLQRCARLRSKEAVNLIESYSFALFNH-------EGSGSVEKDDEILTS 264
L+ YVMSF +LQR A +RS+EAV +IE ++ ALF EG+ KD++I S
Sbjct: 328 LRSYVMSFDAETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIKIS 387
Query: 263 FSSLKRLVLEAVAFGSFLWETEDYIDMLY 177
F +KRLVLEAV FGSFLW+ E ++D Y
Sbjct: 388 FGGMKRLVLEAVTFGSFLWDVESHVDARY 416
>gb|AAL32564.1| Unknown protein [Arabidopsis thaliana] gi|20259856|gb|AAM13275.1|
unknown protein [Arabidopsis thaliana]
Length = 421
Score = 83.2 bits (204), Expect = 2e-15
Identities = 44/89 (49%), Positives = 58/89 (64%), Gaps = 7/89 (7%)
Frame = -3
Query: 422 LKCYVMSFHPGSLQRCARLRSKEAVNLIESYSFALFNH-------EGSGSVEKDDEILTS 264
L+ YVMSF +LQR A +RS+EAV +IE ++ ALF EG+ KD++I S
Sbjct: 328 LRSYVMSFDAETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIKIS 387
Query: 263 FSSLKRLVLEAVAFGSFLWETEDYIDMLY 177
F +KRLVLEAV FGSFLW+ E ++D Y
Sbjct: 388 FGGMKRLVLEAVTFGSFLWDVESHVDARY 416
>gb|AAK30572.1|AF346660_1 unknown [Brassica napus]
Length = 256
Score = 83.2 bits (204), Expect = 2e-15
Identities = 44/89 (49%), Positives = 58/89 (64%), Gaps = 7/89 (7%)
Frame = -3
Query: 422 LKCYVMSFHPGSLQRCARLRSKEAVNLIESYSFALFNH-------EGSGSVEKDDEILTS 264
L+ YVMSF +LQR A +RS+EAV +IE ++ ALF EG+ KD++I S
Sbjct: 163 LRTYVMSFDSETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIKIS 222
Query: 263 FSSLKRLVLEAVAFGSFLWETEDYIDMLY 177
F +KRLVLEAV FGSFLW+ E ++D Y
Sbjct: 223 FGGMKRLVLEAVTFGSFLWDVESHVDARY 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,913,453
Number of Sequences: 1393205
Number of extensions: 9327410
Number of successful extensions: 22489
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22466
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
