Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004815A_C01 KMC004815A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567950.1| putative protein; protein id: At4g34030.1, supp... 132 1e-30
gb|AAK62371.1|AF386926_1 Unknown protein [Arabidopsis thaliana] 132 1e-30
pir||T05433 hypothetical protein F28A23.210 - Arabidopsis thalia... 131 4e-30
gb|AAB62570.1| F02A9.5 homolog [Drosophila melanogaster] 115 3e-25
ref|NP_652724.1| CG3267-PA [Drosophila melanogaster] gi|21645124... 115 3e-25
>ref|NP_567950.1| putative protein; protein id: At4g34030.1, supported by cDNA:
gi_14423377, supported by cDNA: gi_7021221 [Arabidopsis
thaliana] gi|20455074|sp|Q9LDD8|MCCB_ARATH
Methylcrotonyl-CoA carboxylase beta chain, mitochondrial
precursor (3-Methylcrotonyl-CoA carboxylase 2) (MCCase
beta subunit) (3-methylcrotonyl-CoA:carbon dioxide
ligase beta subunit) gi|7021222|gb|AAF35258.1|AF059510_1
3-methylcrotonyl-CoA carboxylase non-biotinylated
subunit [Arabidopsis thaliana]
gi|7021224|gb|AAF35259.1|AF059511_1 3-methylcrotonyl-CoA
carboxylase nonbiotinylated subunit [Arabidopsis
thaliana] gi|23198352|gb|AAN15703.1| Unknown protein
[Arabidopsis thaliana]
Length = 587
Score = 132 bits (333), Expect = 1e-30
Identities = 60/87 (68%), Positives = 76/87 (86%)
Frame = -2
Query: 441 QAAGVLSQIEKTHQKKPGIQWSKEEEEKFKTKVVEAYKVEGSPYYSTARLWDDGIIDPAD 262
QAAGVL+QIE+ +K+ GI+W++EEEE FK K V+AY+ E +PYYSTARLWDDG+IDP D
Sbjct: 501 QAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCD 560
Query: 261 TRKVIGLSISASLNRAIEDTKFGVFRM 181
TRKV+GL +SA+LNR +EDT+FGVFRM
Sbjct: 561 TRKVLGLCLSAALNRPLEDTRFGVFRM 587
>gb|AAK62371.1|AF386926_1 Unknown protein [Arabidopsis thaliana]
Length = 587
Score = 132 bits (333), Expect = 1e-30
Identities = 60/87 (68%), Positives = 76/87 (86%)
Frame = -2
Query: 441 QAAGVLSQIEKTHQKKPGIQWSKEEEEKFKTKVVEAYKVEGSPYYSTARLWDDGIIDPAD 262
QAAGVL+QIE+ +K+ GI+W++EEEE FK K V+AY+ E +PYYSTARLWDDG+IDP D
Sbjct: 501 QAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCD 560
Query: 261 TRKVIGLSISASLNRAIEDTKFGVFRM 181
TRKV+GL +SA+LNR +EDT+FGVFRM
Sbjct: 561 TRKVLGLCLSAALNRPLEDTRFGVFRM 587
>pir||T05433 hypothetical protein F28A23.210 - Arabidopsis thaliana
gi|2911059|emb|CAA17569.1| putative protein [Arabidopsis
thaliana] gi|7270352|emb|CAB80120.1| putative protein
[Arabidopsis thaliana]
Length = 630
Score = 131 bits (329), Expect = 4e-30
Identities = 59/88 (67%), Positives = 76/88 (86%)
Frame = -2
Query: 444 HQAAGVLSQIEKTHQKKPGIQWSKEEEEKFKTKVVEAYKVEGSPYYSTARLWDDGIIDPA 265
+ AAGVL+QIE+ +K+ GI+W++EEEE FK K V+AY+ E +PYYSTARLWDDG+IDP
Sbjct: 543 NSAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPC 602
Query: 264 DTRKVIGLSISASLNRAIEDTKFGVFRM 181
DTRKV+GL +SA+LNR +EDT+FGVFRM
Sbjct: 603 DTRKVLGLCLSAALNRPLEDTRFGVFRM 630
>gb|AAB62570.1| F02A9.5 homolog [Drosophila melanogaster]
Length = 93
Score = 115 bits (287), Expect = 3e-25
Identities = 52/87 (59%), Positives = 72/87 (81%)
Frame = -2
Query: 441 QAAGVLSQIEKTHQKKPGIQWSKEEEEKFKTKVVEAYKVEGSPYYSTARLWDDGIIDPAD 262
QAA V++QI + +K+ G ++S+EE +K K +VE ++ EGSPYYSTARLWDDGIIDPA+
Sbjct: 7 QAANVMAQITEDQRKRAGKEFSEEEAQKLKAPIVEMFEAEGSPYYSTARLWDDGIIDPAN 66
Query: 261 TRKVIGLSISASLNRAIEDTKFGVFRM 181
TR+++GLS+ A+LN A ++TKFGVFRM
Sbjct: 67 TRQILGLSLKAALNNAGQETKFGVFRM 93
>ref|NP_652724.1| CG3267-PA [Drosophila melanogaster] gi|21645124|gb|AAM70824.1|
CG3267-PA [Drosophila melanogaster]
Length = 578
Score = 115 bits (287), Expect = 3e-25
Identities = 52/87 (59%), Positives = 72/87 (81%)
Frame = -2
Query: 441 QAAGVLSQIEKTHQKKPGIQWSKEEEEKFKTKVVEAYKVEGSPYYSTARLWDDGIIDPAD 262
QAA V++QI + +K+ G ++S+EE +K K +VE ++ EGSPYYSTARLWDDGIIDPA+
Sbjct: 492 QAANVMAQITEDQRKRAGKEFSEEEAQKLKAPIVEMFEAEGSPYYSTARLWDDGIIDPAN 551
Query: 261 TRKVIGLSISASLNRAIEDTKFGVFRM 181
TR+++GLS+ A+LN A ++TKFGVFRM
Sbjct: 552 TRQILGLSLKAALNNAGQETKFGVFRM 578
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,804,978
Number of Sequences: 1393205
Number of extensions: 8291940
Number of successful extensions: 22781
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 22192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22760
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
