Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004813A_C01 KMC004813A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL73979.1|AF466201_8 methionine synthase protein [Sorghum bi... 202 5e-51
gb|AAN31836.1| putative 5-methyltetrahydropteroyltriglutamate--h... 199 2e-50
gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thaliana] 199 2e-50
ref|NP_197294.1| 5-methyltetrahydropteroyltriglutamate--homocyst... 199 2e-50
emb|CAA89019.1| cobalamine-independent methionine synthase [Sole... 199 3e-50
>gb|AAL73979.1|AF466201_8 methionine synthase protein [Sorghum bicolor]
Length = 760
Score = 202 bits (513), Expect = 5e-51
Identities = 100/108 (92%), Positives = 104/108 (95%)
Frame = -3
Query: 712 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINK 533
HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEEIADR+NK
Sbjct: 653 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPTTEEIADRVNK 712
Query: 532 MLAVLESNILWVNPDCGLKTRKYTEVKAALTNMVAAAKLIRNQLASAK 389
MLAVL++NILWVNPDCGLKTRKYTEVK ALTNMV+A KLIR QLASAK
Sbjct: 713 MLAVLDTNILWVNPDCGLKTRKYTEVKPALTNMVSATKLIRTQLASAK 760
>gb|AAN31836.1| putative 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase [Arabidopsis thaliana]
Length = 765
Score = 199 bits (507), Expect = 2e-50
Identities = 100/108 (92%), Positives = 103/108 (94%)
Frame = -3
Query: 712 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINK 533
HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP +EEIADR+NK
Sbjct: 658 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNK 717
Query: 532 MLAVLESNILWVNPDCGLKTRKYTEVKAALTNMVAAAKLIRNQLASAK 389
MLAVLE NILWVNPDCGLKTRKYTEVK AL NMV AAKLIR+QLASAK
Sbjct: 718 MLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
>gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thaliana]
Length = 765
Score = 199 bits (507), Expect = 2e-50
Identities = 100/108 (92%), Positives = 103/108 (94%)
Frame = -3
Query: 712 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINK 533
HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP +EEIADR+NK
Sbjct: 658 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNK 717
Query: 532 MLAVLESNILWVNPDCGLKTRKYTEVKAALTNMVAAAKLIRNQLASAK 389
MLAVLE NILWVNPDCGLKTRKYTEVK AL NMV AAKLIR+QLASAK
Sbjct: 718 MLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
>ref|NP_197294.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; protein id: At5g17920.1, supported
by cDNA: gi_13877642, supported by cDNA: gi_15081617,
supported by cDNA: gi_15810168, supported by cDNA:
gi_15982742, supported by cDNA: gi_15982784, supported
by cDNA: gi_17978929, supported by cDNA: gi_17979546,
supported by cDNA: gi_20147148, supported by cDNA:
gi_2738247 [Arabidopsis thaliana]
gi|8134566|sp|O50008|METE_ARATH
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (Vitamin-B12-independent methionine
synthase isozyme) (Cobalamin-independent methionine
synthase isozyme) gi|2738248|gb|AAC50037.1|
cobalamin-independent methionine synthase [Arabidopsis
thaliana] gi|10177894|dbj|BAB11226.1|
cobalamin-independent methionine synthase [Arabidopsis
thaliana] gi|13877643|gb|AAK43899.1|AF370522_1
cobalamin-independent methionine synthase [Arabidopsis
thaliana] gi|15081618|gb|AAK82464.1| AT5g17920/MPI7_60
[Arabidopsis thaliana] gi|15810169|gb|AAL06986.1|
AT5g17920/MPI7_60 [Arabidopsis thaliana]
gi|15982785|gb|AAL09740.1| AT5g17920/MPI7_60
[Arabidopsis thaliana] gi|17978930|gb|AAL47432.1|
AT5g17920/MPI7_60 [Arabidopsis thaliana]
gi|17979547|gb|AAL50108.1| AT5g17920/MPI7_60
[Arabidopsis thaliana] gi|20147149|gb|AAM10291.1|
AT5g17920/MPI7_60 [Arabidopsis thaliana]
Length = 765
Score = 199 bits (507), Expect = 2e-50
Identities = 100/108 (92%), Positives = 103/108 (94%)
Frame = -3
Query: 712 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINK 533
HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP +EEIADR+NK
Sbjct: 658 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNK 717
Query: 532 MLAVLESNILWVNPDCGLKTRKYTEVKAALTNMVAAAKLIRNQLASAK 389
MLAVLE NILWVNPDCGLKTRKYTEVK AL NMV AAKLIR+QLASAK
Sbjct: 718 MLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
>emb|CAA89019.1| cobalamine-independent methionine synthase [Solenostemon
scutellarioides]
Length = 784
Score = 199 bits (506), Expect = 3e-50
Identities = 100/108 (92%), Positives = 103/108 (94%)
Frame = -3
Query: 712 HSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINK 533
HSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEEIADRINK
Sbjct: 677 HSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINK 736
Query: 532 MLAVLESNILWVNPDCGLKTRKYTEVKAALTNMVAAAKLIRNQLASAK 389
MLAVLE+NILWVNPDCGLKTRKY EVK AL NMVAAAKL+R QLASAK
Sbjct: 737 MLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 784
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,587,151
Number of Sequences: 1393205
Number of extensions: 12478483
Number of successful extensions: 30517
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 29260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30409
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
