Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004811A_C01 KMC004811A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica ... 169 1e-41
gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|2882770... 145 3e-34
ref|NP_198055.1| putative protein; protein id: At5g27030.1 [Arab... 145 3e-34
pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis tha... 145 3e-34
dbj|BAC57818.1| P0577B11.15 [Oryza sativa (japonica cultivar-gro... 129 2e-29
>dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 930
Score = 169 bits (429), Expect = 1e-41
Identities = 82/123 (66%), Positives = 97/123 (78%)
Frame = -1
Query: 537 SAPISCAVYSCYSQLIYATFCDANVGVFDADTLRLRCRIAPSVCLSSAALSGNQAVYPFV 358
SAPIS A YS SQL++A F D N+G+FD + LRLRCRIAP LSSAA++ N +VYP V
Sbjct: 808 SAPISHASYSRNSQLVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLV 867
Query: 357 VATHPLAPNQFAVGLTDGSVKVIEPTESEGKWGSSPPVDNGILNGRTASSSTTSNHTADQ 178
VA HP NQFAVGL+DGSVKVIEP ESEGKWG++PP +NG+ NGRT++SS TSN ADQ
Sbjct: 868 VAAHPQESNQFAVGLSDGSVKVIEPLESEGKWGTTPPTENGVPNGRTSTSSATSNPAADQ 927
Query: 177 AQR 169
QR
Sbjct: 928 IQR 930
>gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|28827708|gb|AAO50698.1|
unknown protein [Arabidopsis thaliana]
Length = 1108
Score = 145 bits (366), Expect = 3e-34
Identities = 77/123 (62%), Positives = 86/123 (69%)
Frame = -1
Query: 537 SAPISCAVYSCYSQLIYATFCDANVGVFDADTLRLRCRIAPSVCLSSAALSGNQAVYPFV 358
SAPIS AVY+C SQLIY TF D N+GVFDAD+LRLRCRI+PS L GNQ + P V
Sbjct: 996 SAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ----GNQGLSPLV 1051
Query: 357 VATHPLAPNQFAVGLTDGSVKVIEPTESEGKWGSSPPVDNGILNGRTASSSTTSNHTADQ 178
VA HP PNQFAVGL DGSVK++EPTE EGKWG PP + S STTSN T +Q
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQ 1105
Query: 177 AQR 169
QR
Sbjct: 1106 LQR 1108
>ref|NP_198055.1| putative protein; protein id: At5g27030.1 [Arabidopsis thaliana]
Length = 1167
Score = 145 bits (366), Expect = 3e-34
Identities = 77/123 (62%), Positives = 86/123 (69%)
Frame = -1
Query: 537 SAPISCAVYSCYSQLIYATFCDANVGVFDADTLRLRCRIAPSVCLSSAALSGNQAVYPFV 358
SAPIS AVY+C SQLIY TF D N+GVFDAD+LRLRCRI+PS L GNQ + P V
Sbjct: 1055 SAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ----GNQGLSPLV 1110
Query: 357 VATHPLAPNQFAVGLTDGSVKVIEPTESEGKWGSSPPVDNGILNGRTASSSTTSNHTADQ 178
VA HP PNQFAVGL DGSVK++EPTE EGKWG PP + S STTSN T +Q
Sbjct: 1111 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQ 1164
Query: 177 AQR 169
QR
Sbjct: 1165 LQR 1167
>pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis thaliana
gi|2191165|gb|AAB61051.1| Hypothetical protein F2P16.14
[Arabidopsis thaliana]
Length = 123
Score = 145 bits (366), Expect = 3e-34
Identities = 77/123 (62%), Positives = 86/123 (69%)
Frame = -1
Query: 537 SAPISCAVYSCYSQLIYATFCDANVGVFDADTLRLRCRIAPSVCLSSAALSGNQAVYPFV 358
SAPIS AVY+C SQLIY TF D N+GVFDAD+LRLRCRI+PS L GNQ + P V
Sbjct: 11 SAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ----GNQGLSPLV 66
Query: 357 VATHPLAPNQFAVGLTDGSVKVIEPTESEGKWGSSPPVDNGILNGRTASSSTTSNHTADQ 178
VA HP PNQFAVGL DGSVK++EPTE EGKWG PP + S STTSN T +Q
Sbjct: 67 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQ 120
Query: 177 AQR 169
QR
Sbjct: 121 LQR 123
>dbj|BAC57818.1| P0577B11.15 [Oryza sativa (japonica cultivar-group)]
Length = 1133
Score = 129 bits (324), Expect = 2e-29
Identities = 61/100 (61%), Positives = 76/100 (76%)
Frame = -1
Query: 534 APISCAVYSCYSQLIYATFCDANVGVFDADTLRLRCRIAPSVCLSSAALSGNQAVYPFVV 355
APIS A+YSC LIYA FCD +GVF+A++LRLRCRIAPS + + SG +VYP VV
Sbjct: 1018 APISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGG-SVYPMVV 1076
Query: 354 ATHPLAPNQFAVGLTDGSVKVIEPTESEGKWGSSPPVDNG 235
A HPL PNQ AVG++DG+V V+EP +S+ KWG +PP DNG
Sbjct: 1077 AAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNG 1116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,218,454
Number of Sequences: 1393205
Number of extensions: 9376133
Number of successful extensions: 23715
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23681
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
