Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004806A_C01 KMC004806A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193531.1| putative protein; protein id: At4g17970.1 [Arab... 58 8e-08
ref|NP_199473.1| putative protein; protein id: At5g46610.1 [Arab... 58 1e-07
ref|NP_199472.1| putative protein; protein id: At5g46600.1 [Arab... 50 2e-05
gb|AAL86482.1|AC077693_21 hypothetical protein [Oryza sativa (ja... 49 4e-05
ref|NP_496969.1| Jumonji transcription factor [Caenorhabditis el... 33 2.0
>ref|NP_193531.1| putative protein; protein id: At4g17970.1 [Arabidopsis thaliana]
gi|7487768|pir||T05083 hypothetical protein T6K21.150 -
Arabidopsis thaliana gi|2894606|emb|CAA17140.1| putative
protein [Arabidopsis thaliana]
gi|7268549|emb|CAB78799.1| putative protein [Arabidopsis
thaliana]
Length = 560
Score = 58.2 bits (139), Expect = 8e-08
Identities = 37/71 (52%), Positives = 46/71 (64%)
Frame = +1
Query: 124 LFEYPCMRLATKLCMRLATNVPKVLIELANSIRSYVHGSPEIL*SSSIHHDTL*DLNTAL 303
LF+ PC+RLA ++C K L ELA+SI ++ H SPEIL S H L DLN+A+
Sbjct: 325 LFKDPCVRLAGEVC--------KALTELADSISNHRHCSPEIL--SDHLHVALQDLNSAI 374
Query: 304 KSQLHLFLGSN 336
KSQ LFLGSN
Sbjct: 375 KSQPKLFLGSN 385
Score = 28.1 bits (61), Expect(2) = 0.53
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 362 QHGPYGKSSLSSVKTDSSALLDWKSKRSVSGKQSKEAEQGD 484
+ G G SLSS +TD+SAL+++ +RS S+ + G+
Sbjct: 437 RQGQNGAVSLSSFRTDTSALMEY--RRSFKNSNSEMSAAGE 475
Score = 26.2 bits (56), Expect(2) = 0.53
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 471 QSKVMGP*ISKITI-TSLEFSIALSFSA 551
+ +++ P +SKI + TSLEFS AL F+A
Sbjct: 475 ERRMLRPQLSKIAVMTSLEFSEALPFAA 502
>ref|NP_199473.1| putative protein; protein id: At5g46610.1 [Arabidopsis thaliana]
gi|8885602|dbj|BAA97532.1|
gene_id:F10E10.9~pir||T05083~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 543
Score = 57.8 bits (138), Expect = 1e-07
Identities = 39/74 (52%), Positives = 47/74 (62%)
Frame = +1
Query: 115 LQDLFEYPCMRLATKLCMRLATNVPKVLIELANSIRSYVHGSPEIL*SSSIHHDTL*DLN 294
L+ LF+ PC+RLA ++C KVL ELA SIR+ H SPEIL S L DLN
Sbjct: 327 LRGLFKDPCVRLAGEIC--------KVLSELAASIRNRRHCSPEIL--SDSLQVALQDLN 376
Query: 295 TALKSQLHLFLGSN 336
TA+KSQ LFLGS+
Sbjct: 377 TAIKSQPKLFLGSS 390
>ref|NP_199472.1| putative protein; protein id: At5g46600.1 [Arabidopsis thaliana]
gi|8885601|dbj|BAA97531.1|
gene_id:F10E10.8~pir||T05083~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 539
Score = 50.4 bits (119), Expect = 2e-05
Identities = 34/71 (47%), Positives = 43/71 (59%)
Frame = +1
Query: 124 LFEYPCMRLATKLCMRLATNVPKVLIELANSIRSYVHGSPEIL*SSSIHHDTL*DLNTAL 303
LF+ PC+RLA ++C KVL EL+ SI++ H S EIL S L DLN+ +
Sbjct: 334 LFKDPCVRLAGEIC--------KVLSELSESIQNRRHCSSEIL--SDSLEAALKDLNSTI 383
Query: 304 KSQLHLFLGSN 336
KSQ LFLGSN
Sbjct: 384 KSQPKLFLGSN 394
>gb|AAL86482.1|AC077693_21 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 529
Score = 49.3 bits (116), Expect = 4e-05
Identities = 29/59 (49%), Positives = 39/59 (65%)
Frame = +1
Query: 163 CMRLATNVPKVLIELANSIRSYVHGSPEIL*SSSIHHDTL*DLNTALKSQLHLFLGSNN 339
C R+A V KVL ELA SIR + +P++L S H+ L DLN+A++SQ LFLGS +
Sbjct: 333 CTRVAREVVKVLQELAVSIRDHHRCAPDVL--SDHLHEALQDLNSAIRSQPRLFLGSKH 389
>ref|NP_496969.1| Jumonji transcription factor [Caenorhabditis elegans]
gi|7509971|pir||T27007 hypothetical protein Y48B6A.11 -
Caenorhabditis elegans gi|5824808|emb|CAB54451.1|
Hypothetical protein Y48B6A.11 [Caenorhabditis elegans]
Length = 894
Score = 33.5 bits (75), Expect = 2.0
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 504 FYLSRVPS-PCSASFDCLPDTLLLDFQSSSAEESVFTLDNELFPYGP 367
F SR+PS PC++S PD +L ++SSA S ++N+ P P
Sbjct: 10 FPSSRIPSEPCASSGPLFPDDVLFTTEASSASSSSCHVENDSRPLSP 56
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,777,876
Number of Sequences: 1393205
Number of extensions: 9868956
Number of successful extensions: 23184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23171
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
