Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004801A_C01 KMC004801A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568834.1| putative protein; protein id: At5g55970.1, supp... 149 2e-35
ref|NP_194388.1| putative protein; protein id: At4g26580.1 [Arab... 139 2e-32
dbj|BAB92290.1| P0421H07.18 [Oryza sativa (japonica cultivar-gro... 117 2e-25
pir||T04466 hypothetical protein F4D11.200 - Arabidopsis thalian... 88 8e-17
ref|NP_194986.2| putative protein; protein id: At4g32600.1, supp... 88 8e-17
>ref|NP_568834.1| putative protein; protein id: At5g55970.1, supported by cDNA:
141890. [Arabidopsis thaliana]
gi|21553392|gb|AAM62485.1| unknown [Arabidopsis
thaliana]
Length = 343
Score = 149 bits (377), Expect = 2e-35
Identities = 70/106 (66%), Positives = 82/106 (77%)
Frame = -1
Query: 630 PLVSTLLGYDMHMGSSARGASEDQISLLASWKCKAAHANLDLSHDDPQTSDRLIYEDPEC 451
PL+S+LLGY+M+MGSS R AS+DQIS L SWK K +D S D + + +DPEC
Sbjct: 242 PLISSLLGYNMNMGSSDRAASDDQISSLPSWKFK----RIDDSASDSDSDSATVTDDPEC 297
Query: 450 CICLAKYKDKEEVRQLPCSHLFHPQCVDQWLKIISCCPLCKQGLQR 313
CICLAKYKDKEEVR+LPCSH FH +CVDQWL+IISCCPLCKQ L R
Sbjct: 298 CICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDLPR 343
>ref|NP_194388.1| putative protein; protein id: At4g26580.1 [Arabidopsis thaliana]
gi|7487042|pir||T08924 hypothetical protein T15N24.30 -
Arabidopsis thaliana gi|4938496|emb|CAB43854.1| putative
protein [Arabidopsis thaliana]
gi|7269510|emb|CAB79513.1| putative protein [Arabidopsis
thaliana]
Length = 464
Score = 139 bits (351), Expect = 2e-32
Identities = 67/104 (64%), Positives = 81/104 (77%)
Frame = -1
Query: 630 PLVSTLLGYDMHMGSSARGASEDQISLLASWKCKAAHANLDLSHDDPQTSDRLIYEDPEC 451
PLVS+ LGY+M++GSS +GAS+DQIS L SWK K +D + D Q ++ DPEC
Sbjct: 368 PLVSSFLGYNMNVGSSEKGASDDQISSLPSWKYKL----IDETSDSSQANN-----DPEC 418
Query: 450 CICLAKYKDKEEVRQLPCSHLFHPQCVDQWLKIISCCPLCKQGL 319
CICLAKYK+KEEVR+LPCSH FH +CVDQWL+IISCCPLCKQ L
Sbjct: 419 CICLAKYKEKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 462
>dbj|BAB92290.1| P0421H07.18 [Oryza sativa (japonica cultivar-group)]
Length = 304
Score = 117 bits (292), Expect = 2e-25
Identities = 57/105 (54%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = -1
Query: 630 PLVSTLLGYDMHMGSSARGASEDQISLLASWKCKA-AHANLDLSHDDPQTSDRLIYEDPE 454
P V LGY+M+ S RGAS++Q++ L W+ K A A D HDD E
Sbjct: 210 PAVGYALGYNMNSASVGRGASDEQLAALPQWRFKEPADAPRDRDHDDQ-----------E 258
Query: 453 CCICLAKYKDKEEVRQLPCSHLFHPQCVDQWLKIISCCPLCKQGL 319
CCICLA+YK+KEEVRQLPC+H+FH +CVD+WL+IIS CPLCKQ L
Sbjct: 259 CCICLAQYKEKEEVRQLPCTHMFHLKCVDRWLRIISSCPLCKQEL 303
>pir||T04466 hypothetical protein F4D11.200 - Arabidopsis thaliana
gi|3063710|emb|CAA18601.1| putative protein [Arabidopsis
thaliana] gi|7270164|emb|CAB79977.1| putative protein
[Arabidopsis thaliana]
Length = 495
Score = 88.2 bits (217), Expect = 8e-17
Identities = 45/113 (39%), Positives = 65/113 (56%), Gaps = 12/113 (10%)
Frame = -1
Query: 630 PLVSTLLGYDMHMGSSARGASEDQISLLASWKCKAAHANLDLSHDDPQTSDRLIY----- 466
P + ++LGY + + RGA+ + I+ L + K K + + + TS+ +
Sbjct: 293 PCIISILGYREDL-TQPRGATPESINALPTHKFKLKKSRSNGDDNGSSTSEGGVVAAGTD 351
Query: 465 -------EDPECCICLAKYKDKEEVRQLPCSHLFHPQCVDQWLKIISCCPLCK 328
ED CCICLAKY + EE+R+LPCSH FH +CVD+WLKI + CPLCK
Sbjct: 352 NERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCK 404
>ref|NP_194986.2| putative protein; protein id: At4g32600.1, supported by cDNA:
gi_19698906, supported by cDNA: gi_20465640 [Arabidopsis
thaliana] gi|18377636|gb|AAL66968.1| unknown protein
[Arabidopsis thaliana] gi|19698907|gb|AAL91189.1|
putative protein [Arabidopsis thaliana]
gi|20465641|gb|AAM20289.1| unknown protein [Arabidopsis
thaliana]
Length = 453
Score = 88.2 bits (217), Expect = 8e-17
Identities = 45/113 (39%), Positives = 65/113 (56%), Gaps = 12/113 (10%)
Frame = -1
Query: 630 PLVSTLLGYDMHMGSSARGASEDQISLLASWKCKAAHANLDLSHDDPQTSDRLIY----- 466
P + ++LGY + + RGA+ + I+ L + K K + + + TS+ +
Sbjct: 293 PCIISILGYREDL-TQPRGATPESINALPTHKFKLKKSRSNGDDNGSSTSEGGVVAAGTD 351
Query: 465 -------EDPECCICLAKYKDKEEVRQLPCSHLFHPQCVDQWLKIISCCPLCK 328
ED CCICLAKY + EE+R+LPCSH FH +CVD+WLKI + CPLCK
Sbjct: 352 NERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCK 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,408,582
Number of Sequences: 1393205
Number of extensions: 11630089
Number of successful extensions: 28258
Number of sequences better than 10.0: 1099
Number of HSP's better than 10.0 without gapping: 27160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28036
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
