Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004796A_C02 KMC004796A_c02
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL47484.1| AT5g10020/T31P16_9 [Arabidopsis thaliana] 135 9e-38
ref|NP_196564.1| leucine-rich repeat transmembrane protein kinas... 135 9e-38
pir||T50006 receptor protein kinase-like protein - Arabidopsis t... 135 9e-38
dbj|BAC07070.1| putative receptor-like protein kinase [Oryza sat... 131 6e-30
dbj|BAC57345.1| OSJNBa0077B15.1 [Oryza sativa (japonica cultivar... 97 6e-24
>gb|AAL47484.1| AT5g10020/T31P16_9 [Arabidopsis thaliana]
Length = 1048
Score = 135 bits (339), Expect(2) = 9e-38
Identities = 64/79 (81%), Positives = 74/79 (93%)
Frame = -2
Query: 603 APELATASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRV 424
APEL++ASKP+P+ K+DVYA GVILMELLTR+SAGDIISGQ+GAVDLTDWVRLC++EGR
Sbjct: 939 APELSSASKPIPTLKSDVYAFGVILMELLTRRSAGDIISGQTGAVDLTDWVRLCDQEGRR 998
Query: 423 MDCIDRDIAGGEESSKEMD 367
MDCIDRDIAGGEE SK M+
Sbjct: 999 MDCIDRDIAGGEEFSKGME 1017
Score = 43.9 bits (102), Expect(2) = 9e-38
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 377 KRWTNCLATSLRCILPVHERPNIRQVFDELCSISS 273
K + LA ++RCIL V+ERPNIRQV D L SIS+
Sbjct: 1014 KGMEDALAVAIRCILSVNERPNIRQVLDHLTSISA 1048
>ref|NP_196564.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g10020.1, supported by cDNA: gi_17978959
[Arabidopsis thaliana]
Length = 1048
Score = 135 bits (339), Expect(2) = 9e-38
Identities = 64/79 (81%), Positives = 74/79 (93%)
Frame = -2
Query: 603 APELATASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRV 424
APEL++ASKP+P+ K+DVYA GVILMELLTR+SAGDIISGQ+GAVDLTDWVRLC++EGR
Sbjct: 939 APELSSASKPIPTLKSDVYAFGVILMELLTRRSAGDIISGQTGAVDLTDWVRLCDQEGRR 998
Query: 423 MDCIDRDIAGGEESSKEMD 367
MDCIDRDIAGGEE SK M+
Sbjct: 999 MDCIDRDIAGGEEFSKGME 1017
Score = 43.9 bits (102), Expect(2) = 9e-38
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 377 KRWTNCLATSLRCILPVHERPNIRQVFDELCSISS 273
K + LA ++RCIL V+ERPNIRQV D L SIS+
Sbjct: 1014 KGMEDALAVAIRCILSVNERPNIRQVLDHLTSISA 1048
>pir||T50006 receptor protein kinase-like protein - Arabidopsis thaliana
gi|7960721|emb|CAB92043.1| receptor protein
kinase-like(fragment) [Arabidopsis thaliana]
Length = 509
Score = 135 bits (339), Expect(2) = 9e-38
Identities = 64/79 (81%), Positives = 74/79 (93%)
Frame = -2
Query: 603 APELATASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRV 424
APEL++ASKP+P+ K+DVYA GVILMELLTR+SAGDIISGQ+GAVDLTDWVRLC++EGR
Sbjct: 400 APELSSASKPIPTLKSDVYAFGVILMELLTRRSAGDIISGQTGAVDLTDWVRLCDQEGRR 459
Query: 423 MDCIDRDIAGGEESSKEMD 367
MDCIDRDIAGGEE SK M+
Sbjct: 460 MDCIDRDIAGGEEFSKGME 478
Score = 43.9 bits (102), Expect(2) = 9e-38
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 377 KRWTNCLATSLRCILPVHERPNIRQVFDELCSISS 273
K + LA ++RCIL V+ERPNIRQV D L SIS+
Sbjct: 475 KGMEDALAVAIRCILSVNERPNIRQVLDHLTSISA 509
>dbj|BAC07070.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 1059
Score = 131 bits (330), Expect = 6e-30
Identities = 63/82 (76%), Positives = 71/82 (85%)
Frame = -2
Query: 606 RAPELATASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGR 427
RAPELA +KP+PSFKADVYA GVI+ME+LTRKSAGDIISGQSGAVDLTDWV++C REGR
Sbjct: 949 RAPELANTAKPMPSFKADVYAFGVIVMEMLTRKSAGDIISGQSGAVDLTDWVQMCNREGR 1008
Query: 426 VMDCIDRDIAGGEESSKEMDQL 361
DC DRDI G EES + MD+L
Sbjct: 1009 GTDCFDRDITGLEESPRVMDEL 1030
Score = 47.0 bits (110), Expect = 2e-04
Identities = 21/39 (53%), Positives = 29/39 (73%)
Frame = -3
Query: 392 VKNPPKRWTNCLATSLRCILPVHERPNIRQVFDELCSIS 276
++ P+ LA SLRCILPV+ERPN++ V D+LCSI+
Sbjct: 1020 LEESPRVMDELLAISLRCILPVNERPNMKTVCDDLCSIT 1058
>dbj|BAC57345.1| OSJNBa0077B15.1 [Oryza sativa (japonica cultivar-group)]
Length = 1066
Score = 97.1 bits (240), Expect(2) = 6e-24
Identities = 46/75 (61%), Positives = 55/75 (73%)
Frame = -2
Query: 606 RAPELATASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGR 427
RAPELA + KP PSFK+DVYA GV+L+ELLT + AGD++SG G VDLTDWVRL EGR
Sbjct: 955 RAPELAASKKPSPSFKSDVYAFGVVLLELLTGRCAGDVVSGSEGGVDLTDWVRLRVAEGR 1014
Query: 426 VMDCIDRDIAGGEES 382
DC D +A E+
Sbjct: 1015 GSDCFDPAMASDSEN 1029
Score = 35.4 bits (80), Expect(2) = 6e-24
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 377 KRWTNCLATSLRCILPVHERPNIRQVFDELCSI 279
K + L +LRCI PV ERP I+ V+++L SI
Sbjct: 1034 KGMKDVLGIALRCIRPVSERPGIKSVYEDLSSI 1066
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,342,192
Number of Sequences: 1393205
Number of extensions: 11740630
Number of successful extensions: 34213
Number of sequences better than 10.0: 736
Number of HSP's better than 10.0 without gapping: 32697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34088
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
