Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004791A_C01 KMC004791A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51237 scarecrow-like protein 6 [imported] - Arabidopsis th... 116 1e-25
ref|NP_191926.1| scarecrow-like 6 (SCL6); protein id: At4g00150.... 116 1e-25
gb|AAM90848.1|AF481952_1 hairy meristem [Petunia x hybrida] 105 4e-22
ref|NP_182041.1| putative SCARECROW gene regulator; protein id: ... 104 6e-22
gb|AAO42084.1| putative SCARECROW gene regulator [Arabidopsis th... 104 6e-22
>pir||T51237 scarecrow-like protein 6 [imported] - Arabidopsis thaliana
(fragment) gi|4580519|gb|AAD24406.1|AF036303_1
scarecrow-like 6 [Arabidopsis thaliana]
Length = 378
Score = 116 bits (291), Expect = 1e-25
Identities = 53/90 (58%), Positives = 68/90 (74%), Gaps = 1/90 (1%)
Frame = -1
Query: 535 QKIERHFILPDMKKTIFGHNHSHEK-LPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAP 359
QKIER I P+++K + + E+ + W++MFLQ GFSP T SNFTESQAECLVQR P
Sbjct: 286 QKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTP 345
Query: 358 VRGFQLERKHSSFVLCWQQKELISVSTWRC 269
VRGF +E+KH+S +LCWQ+ EL+ VS WRC
Sbjct: 346 VRGFHVEKKHNSLLLCWQRTELVGVSAWRC 375
>ref|NP_191926.1| scarecrow-like 6 (SCL6); protein id: At4g00150.1, supported by
cDNA: gi_18087576 [Arabidopsis thaliana]
gi|7486541|pir||T01343 hypothetical protein F6N15.20 -
Arabidopsis thaliana gi|3193314|gb|AAC19296.1| contains
similarity to Arabidopsis scarecrow (GB:U62798)
[Arabidopsis thaliana] gi|7267102|emb|CAB80773.1|
scarecrow-like 6 (SCL6) [Arabidopsis thaliana]
gi|18087577|gb|AAL58919.1|AF462831_1 AT4g00150/F6N15_20
[Arabidopsis thaliana] gi|22137044|gb|AAM91367.1|
At4g00150/F6N15_20 [Arabidopsis thaliana]
Length = 558
Score = 116 bits (291), Expect = 1e-25
Identities = 53/90 (58%), Positives = 68/90 (74%), Gaps = 1/90 (1%)
Frame = -1
Query: 535 QKIERHFILPDMKKTIFGHNHSHEK-LPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAP 359
QKIER I P+++K + + E+ + W++MFLQ GFSP T SNFTESQAECLVQR P
Sbjct: 466 QKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTP 525
Query: 358 VRGFQLERKHSSFVLCWQQKELISVSTWRC 269
VRGF +E+KH+S +LCWQ+ EL+ VS WRC
Sbjct: 526 VRGFHVEKKHNSLLLCWQRTELVGVSAWRC 555
>gb|AAM90848.1|AF481952_1 hairy meristem [Petunia x hybrida]
Length = 721
Score = 105 bits (261), Expect = 4e-22
Identities = 44/89 (49%), Positives = 63/89 (70%)
Frame = -1
Query: 535 QKIERHFILPDMKKTIFGHNHSHEKLPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAPV 356
+KIE+ +LP ++ + G S +++P WR++F GFSP FSN TE QAEC+V+R V
Sbjct: 633 KKIEKSLLLPSIENMVLGRLRSPDRMPQWRNLFASAGFSPVAFSNLTEIQAECVVKRTQV 692
Query: 355 RGFQLERKHSSFVLCWQQKELISVSTWRC 269
GF +E++ SS VLCW+Q+EL+S TWRC
Sbjct: 693 GGFHVEKRQSSLVLCWKQQELLSALTWRC 721
>ref|NP_182041.1| putative SCARECROW gene regulator; protein id: At2g45160.1
[Arabidopsis thaliana] gi|25408931|pir||B84887 probable
SCARECROW gene regulator [imported] - Arabidopsis
thaliana
Length = 640
Score = 104 bits (260), Expect = 6e-22
Identities = 44/87 (50%), Positives = 63/87 (71%)
Frame = -1
Query: 529 IERHFILPDMKKTIFGHNHSHEKLPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAPVRG 350
IER ++ P ++K + + E+ PPWR +F Q GFSP + S E+QAECL+QR PVRG
Sbjct: 554 IERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRG 613
Query: 349 FQLERKHSSFVLCWQQKELISVSTWRC 269
F +E++ SS V+CWQ+KEL++VS W+C
Sbjct: 614 FHVEKRQSSLVMCWQRKELVTVSAWKC 640
>gb|AAO42084.1| putative SCARECROW gene regulator [Arabidopsis thaliana]
Length = 640
Score = 104 bits (260), Expect = 6e-22
Identities = 44/87 (50%), Positives = 63/87 (71%)
Frame = -1
Query: 529 IERHFILPDMKKTIFGHNHSHEKLPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAPVRG 350
IER ++ P ++K + + E+ PPWR +F Q GFSP + S E+QAECL+QR PVRG
Sbjct: 554 IERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRG 613
Query: 349 FQLERKHSSFVLCWQQKELISVSTWRC 269
F +E++ SS V+CWQ+KEL++VS W+C
Sbjct: 614 FHVEKRQSSLVMCWQRKELVTVSAWKC 640
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,213,636
Number of Sequences: 1393205
Number of extensions: 8584931
Number of successful extensions: 19580
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 19253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19550
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
