Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004783A_C01 KMC004783A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566181.1| expressed protein; protein id: At3g02700.1, sup... 87 1e-16
gb|AAM65976.1| unknown [Arabidopsis thaliana] 86 3e-16
ref|NP_197140.1| putative protein; protein id: At5g16360.1 [Arab... 58 5e-08
ref|NP_568167.1| putative protein; protein id: At5g06370.1, supp... 54 9e-07
dbj|BAB08959.1| gb|AAF32477.1~gene_id:MHF15.11~similar to unknow... 54 9e-07
>ref|NP_566181.1| expressed protein; protein id: At3g02700.1, supported by cDNA:
6694. [Arabidopsis thaliana] gi|6957733|gb|AAF32477.1|
unknown protein [Arabidopsis thaliana]
gi|26449424|dbj|BAC41839.1| unknown protein [Arabidopsis
thaliana]
Length = 252
Score = 86.7 bits (213), Expect = 1e-16
Identities = 43/61 (70%), Positives = 52/61 (84%)
Frame = -1
Query: 493 GQAASYLAAASTVVSTPLRFMTNSFGGLALVGYGLYCVGRLMSDIGMRRDVSKVPVERLI 314
GQAAS +AAAS ++S+PLRF+ FGGLA+ GYG+YC RL+SDIGMR DVSKVPVERL+
Sbjct: 175 GQAASIVAAASVLLSSPLRFVAG-FGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVERLV 233
Query: 313 A 311
A
Sbjct: 234 A 234
>gb|AAM65976.1| unknown [Arabidopsis thaliana]
Length = 252
Score = 85.5 bits (210), Expect = 3e-16
Identities = 42/61 (68%), Positives = 52/61 (84%)
Frame = -1
Query: 493 GQAASYLAAASTVVSTPLRFMTNSFGGLALVGYGLYCVGRLMSDIGMRRDVSKVPVERLI 314
GQAAS +AAAS ++S+PLRF+ FGGLA+ GYG+YC RL+SDIGMR DVSKVPV+RL+
Sbjct: 175 GQAASIVAAASVLLSSPLRFVAG-FGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVQRLV 233
Query: 313 A 311
A
Sbjct: 234 A 234
>ref|NP_197140.1| putative protein; protein id: At5g16360.1 [Arabidopsis thaliana]
gi|9759118|dbj|BAB09603.1|
gb|AAF32477.1~gene_id:MQK4.8~similar to unknown protein
[Arabidopsis thaliana] gi|27754415|gb|AAO22656.1|
unknown protein [Arabidopsis thaliana]
gi|28393911|gb|AAO42363.1| unknown protein [Arabidopsis
thaliana]
Length = 283
Score = 58.2 bits (139), Expect = 5e-08
Identities = 26/60 (43%), Positives = 39/60 (64%)
Frame = -1
Query: 481 SYLAAASTVVSTPLRFMTNSFGGLALVGYGLYCVGRLMSDIGMRRDVSKVPVERLIASPG 302
S ++ + +S+ ++++ GGLAL YG YC+GRL DIG+R+D KV VE L+A G
Sbjct: 212 SVVSVVNQFISSTVKYVVPGIGGLALAEYGNYCIGRLFYDIGVRKDACKVSVEELVAFVG 271
>ref|NP_568167.1| putative protein; protein id: At5g06370.1, supported by cDNA:
117588., supported by cDNA: gi_14190474, supported by
cDNA: gi_15809733 [Arabidopsis thaliana]
gi|14190475|gb|AAK55718.1|AF380637_1 AT5g06370/MHF15_11
[Arabidopsis thaliana] gi|15809734|gb|AAL06795.1|
AT5g06370/MHF15_11 [Arabidopsis thaliana]
Length = 259
Score = 53.9 bits (128), Expect = 9e-07
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = -1
Query: 493 GQAASYLAAA-STVVSTPLRFMTNSFGGLALVGYGLYCVGRLMSDIGMRRDVSKVPVERL 317
GQA S + + V+STP+R +T + G+A G+YC R +DIGMR DV+KV E L
Sbjct: 175 GQAVSIIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDL 234
>dbj|BAB08959.1| gb|AAF32477.1~gene_id:MHF15.11~similar to unknown protein
[Arabidopsis thaliana]
Length = 239
Score = 53.9 bits (128), Expect = 9e-07
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = -1
Query: 493 GQAASYLAAA-STVVSTPLRFMTNSFGGLALVGYGLYCVGRLMSDIGMRRDVSKVPVERL 317
GQA S + + V+STP+R +T + G+A G+YC R +DIGMR DV+KV E L
Sbjct: 155 GQAVSIIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDL 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,347,625
Number of Sequences: 1393205
Number of extensions: 8371082
Number of successful extensions: 25965
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25943
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
