Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004777A_C01 KMC004777A_c01
(372 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197591.1| ABI3-interacting protein 2; protein id: At5g209... 162 1e-39
emb|CAB75509.1| ABI3-interacting protein 2, AIP2 [Arabidopsis th... 159 1e-38
ref|NP_195818.1| putative protein; protein id: At5g01980.1 [Arab... 79 1e-14
ref|NP_186883.1| RING zinc-finger protein, putative; protein id:... 79 2e-14
gb|AAL59019.1|AC087182_2 putative zinc finger protein [Oryza sat... 77 7e-14
>ref|NP_197591.1| ABI3-interacting protein 2; protein id: At5g20910.1, supported by
cDNA: 30983., supported by cDNA: gi_19698964
[Arabidopsis thaliana] gi|19698965|gb|AAL91218.1|
ABI3-interacting protein 2 [Arabidopsis thaliana]
gi|23198060|gb|AAN15557.1| ABI3-interacting protein 2
[Arabidopsis thaliana]
Length = 310
Score = 162 bits (409), Expect = 1e-39
Identities = 70/79 (88%), Positives = 74/79 (93%)
Frame = -1
Query: 369 ICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEA 190
IC+ENLV+ DKMQELPCKHTFHPPCLKPWLDEHNSCPICR+EL TDD YE+WKEREKEA
Sbjct: 232 ICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDQKYENWKEREKEA 291
Query: 189 EEERKGAANAVRGGEYMYV 133
EEERKGA NAVRGGEYMYV
Sbjct: 292 EEERKGAENAVRGGEYMYV 310
>emb|CAB75509.1| ABI3-interacting protein 2, AIP2 [Arabidopsis thaliana]
Length = 310
Score = 159 bits (401), Expect = 1e-38
Identities = 69/79 (87%), Positives = 73/79 (92%)
Frame = -1
Query: 369 ICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEA 190
IC+ENLV+ DKMQELPCKHTFHPPCLKPWLDEHNSCPICR+EL T D YE+WKEREKEA
Sbjct: 232 ICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTADQKYENWKEREKEA 291
Query: 189 EEERKGAANAVRGGEYMYV 133
EEERKGA NAVRGGEYMYV
Sbjct: 292 EEERKGAENAVRGGEYMYV 310
>ref|NP_195818.1| putative protein; protein id: At5g01980.1 [Arabidopsis thaliana]
gi|11358411|pir||T48219 hypothetical protein T7H20.30 -
Arabidopsis thaliana gi|7340672|emb|CAB82971.1| putative
protein [Arabidopsis thaliana]
Length = 493
Score = 79.0 bits (193), Expect = 1e-14
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = -1
Query: 372 AICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKE 193
AIC+E + ++ +LPC H +H C+ PWL NSCP+CRYEL TDD YE K +
Sbjct: 351 AICKELFSLRNETTQLPCLHLYHAHCIVPWLSARNSCPLCRYELPTDDKDYEEGKRNVLD 410
Query: 192 AEEERKGAANAVRGGEYMYV 133
E+ + + GE YV
Sbjct: 411 VSEDSSSSDDGTESGEEEYV 430
>ref|NP_186883.1| RING zinc-finger protein, putative; protein id: At3g02340.1
[Arabidopsis thaliana]
gi|10092183|gb|AAG12602.1|AC068900_8 RING zinc-finger
protein, putative; 7563-8792 [Arabidopsis thaliana]
Length = 409
Score = 78.6 bits (192), Expect = 2e-14
Identities = 34/77 (44%), Positives = 47/77 (60%)
Frame = -1
Query: 372 AICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKE 193
A+C++ ++V +K++ LPC H +H C+ PWL N+CP+CRYEL TDD Y ER K
Sbjct: 336 AVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDDLEY----ERHKS 391
Query: 192 AEEERKGAANAVRGGEY 142
+E G A V G Y
Sbjct: 392 SERGDTGLARNVLPGRY 408
>gb|AAL59019.1|AC087182_2 putative zinc finger protein [Oryza sativa]
Length = 370
Score = 76.6 bits (187), Expect = 7e-14
Identities = 29/56 (51%), Positives = 40/56 (70%)
Frame = -1
Query: 372 AICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKE 205
A+C+E+ + +++PCKH +H C+ PWLD HNSCPICR+EL TDD YE K+
Sbjct: 237 AVCKEDFSPGEGAKQMPCKHIYHADCIMPWLDLHNSCPICRFELPTDDPDYEGRKK 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,838,853
Number of Sequences: 1393205
Number of extensions: 6700149
Number of successful extensions: 24269
Number of sequences better than 10.0: 1157
Number of HSP's better than 10.0 without gapping: 22437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24080
length of database: 448,689,247
effective HSP length: 99
effective length of database: 310,761,952
effective search space used: 7458286848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
