Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004763A_C01 KMC004763A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 gi|1654142|gb|AAB... 222 3e-57
ref|NP_180050.2| ADP-ribosylation factor 3; protein id: At2g2476... 221 7e-57
gb|AAM15297.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] ... 217 1e-55
sp|P25160|ARL1_DROME GTP-binding ADP-ribosylation factor homolog... 148 5e-35
ref|NP_524098.2| Arflike at 72A CG6025-PA gi|103187|pir||A40438 ... 148 5e-35
>sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 gi|1654142|gb|AAB17725.1| small
GTP-binding protein ARF
Length = 182
Score = 222 bits (565), Expect = 3e-57
Identities = 106/116 (91%), Positives = 112/116 (96%)
Frame = -3
Query: 575 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFAN 396
DLGGQTSIRPYWRCYFPNTQA+IYVVDSSDTDR+ +AKEEFHAILEEEELKGAVVLIFAN
Sbjct: 67 DLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFAN 126
Query: 395 KQDLPGALDDAAVTEALELHKIKNRPWSIFKTSAIKGEGLFEGLDWLSNTLKSGGG 228
KQDLPGALDDAAVTEALELHKIK+R W+IFKT A+KGEGLFEGLDWLSNTLKSG G
Sbjct: 127 KQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGSG 182
>ref|NP_180050.2| ADP-ribosylation factor 3; protein id: At2g24765.1, supported by
cDNA: gi_17380731 [Arabidopsis thaliana]
gi|728882|sp|P40940|ARF3_ARATH ADP-ribosylation factor 3
gi|541846|pir||S41938 ADP-ribosylation factor 3 -
Arabidopsis thaliana gi|453191|emb|CAA54564.1|
ADP-ribosylation factor 3 [Arabidopsis thaliana]
gi|17380732|gb|AAL36196.1| putative ADP-ribosylation
factor 3 [Arabidopsis thaliana]
gi|23297380|gb|AAN12955.1| ADP-ribosylation factor 3
[Arabidopsis thaliana] gi|26450543|dbj|BAC42384.1|
putative ADP-ribosylation factor 3 protein [Arabidopsis
thaliana]
Length = 182
Score = 221 bits (562), Expect = 7e-57
Identities = 105/116 (90%), Positives = 112/116 (96%)
Frame = -3
Query: 575 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFAN 396
DLGGQTSIRPYWRCYFPNTQA+IYVVDSSDTDR+ +AKEEFHAILEE+ELKGAVVLIFAN
Sbjct: 67 DLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFAN 126
Query: 395 KQDLPGALDDAAVTEALELHKIKNRPWSIFKTSAIKGEGLFEGLDWLSNTLKSGGG 228
KQDLPGALDDAAVTEALELHKIK+R W+IFKT A+KGEGLFEGLDWLSNTLKSG G
Sbjct: 127 KQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGSG 182
>gb|AAM15297.1| ADP-ribosylation factor 3 [Arabidopsis thaliana]
gi|20198234|gb|AAM15475.1| ADP-ribosylation factor 3
[Arabidopsis thaliana]
Length = 116
Score = 217 bits (552), Expect = 1e-55
Identities = 103/114 (90%), Positives = 110/114 (96%)
Frame = -3
Query: 569 GGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFANKQ 390
GGQTSIRPYWRCYFPNTQA+IYVVDSSDTDR+ +AKEEFHAILEE+ELKGAVVLIFANKQ
Sbjct: 3 GGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQ 62
Query: 389 DLPGALDDAAVTEALELHKIKNRPWSIFKTSAIKGEGLFEGLDWLSNTLKSGGG 228
DLPGALDDAAVTEALELHKIK+R W+IFKT A+KGEGLFEGLDWLSNTLKSG G
Sbjct: 63 DLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGSG 116
>sp|P25160|ARL1_DROME GTP-binding ADP-ribosylation factor homolog 1 protein
Length = 181
Score = 148 bits (373), Expect = 5e-35
Identities = 71/113 (62%), Positives = 88/113 (77%)
Frame = -3
Query: 575 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFAN 396
DLGGQTSIRPYWRCY+ NT AIIYVVDS+D DR+ I+K+E +L EEEL GA++++ AN
Sbjct: 67 DLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLAN 126
Query: 395 KQDLPGALDDAAVTEALELHKIKNRPWSIFKTSAIKGEGLFEGLDWLSNTLKS 237
KQD+ G + A V AL L +KNR + IFKTSA KGEGL + +DWLSNTL+S
Sbjct: 127 KQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 179
>ref|NP_524098.2| Arflike at 72A CG6025-PA gi|103187|pir||A40438 GTP-binding protein
arl (arf-like) - fruit fly (Drosophila melanogaster)
gi|156919|gb|AAA28365.1| GTP-binding protein
gi|23093404|gb|AAF49556.2| CG6025-PA [Drosophila
melanogaster] gi|25012198|gb|AAN71215.1| GM20805p
[Drosophila melanogaster]
Length = 180
Score = 148 bits (373), Expect = 5e-35
Identities = 71/113 (62%), Positives = 88/113 (77%)
Frame = -3
Query: 575 DLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFAN 396
DLGGQTSIRPYWRCY+ NT AIIYVVDS+D DR+ I+K+E +L EEEL GA++++ AN
Sbjct: 66 DLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLAN 125
Query: 395 KQDLPGALDDAAVTEALELHKIKNRPWSIFKTSAIKGEGLFEGLDWLSNTLKS 237
KQD+ G + A V AL L +KNR + IFKTSA KGEGL + +DWLSNTL+S
Sbjct: 126 KQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,841,229
Number of Sequences: 1393205
Number of extensions: 10638066
Number of successful extensions: 24186
Number of sequences better than 10.0: 539
Number of HSP's better than 10.0 without gapping: 23215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24069
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
