Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004761A_C01 KMC004761A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565480.1| protein phosphatase 2C (PP2C); protein id: At2g... 75 4e-13
ref|NP_567808.1| protein phosphatase 2C (PP2C); protein id: At4g... 73 2e-12
ref|NP_188144.1| protein phosphatase 2C (PP2C); protein id: At3g... 68 5e-11
gb|AAM53328.1| putative protein phosphatase type 2C [Arabidopsis... 68 5e-11
pir||E84591 probable protein phosphatase 2C [imported] - Arabido... 67 2e-10
>ref|NP_565480.1| protein phosphatase 2C (PP2C); protein id: At2g20630.1, supported
by cDNA: 22316., supported by cDNA: gi_15724169,
supported by cDNA: gi_18652944, supported by cDNA:
gi_20147398 [Arabidopsis thaliana]
gi|15724170|gb|AAL06477.1|AF411787_1 At2g20630/F23N11.5
[Arabidopsis thaliana] gi|18652945|dbj|BAB84701.1|
protein phosphatase 2C [Arabidopsis thaliana]
gi|20147399|gb|AAM10409.1| At2g20630/F23N11.5
[Arabidopsis thaliana] gi|20198045|gb|AAD21710.2|
putative protein phosphatase 2C [Arabidopsis thaliana]
Length = 279
Score = 75.1 bits (183), Expect = 4e-13
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = -1
Query: 515 DGIWKVMSNQKAVDFIRQIKNAQAAAERLI*KAVSKKSKDDISCIVVKFQ 366
DG+WKVMSNQ+AVD I+ IK+ QAAA+ LI +AVSK+S DDISCIVV+FQ
Sbjct: 230 DGVWKVMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVVRFQ 279
>ref|NP_567808.1| protein phosphatase 2C (PP2C); protein id: At4g28400.1, supported
by cDNA: gi_16604584, supported by cDNA: gi_20258990
[Arabidopsis thaliana] gi|16604585|gb|AAL24149.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
gi|20258991|gb|AAM14211.1| putative protein phosphatase
2C [Arabidopsis thaliana]
Length = 283
Score = 73.2 bits (178), Expect = 2e-12
Identities = 35/49 (71%), Positives = 43/49 (87%)
Frame = -1
Query: 515 DGIWKVMSNQKAVDFIRQIKNAQAAAERLI*KAVSKKSKDDISCIVVKF 369
DGIWKV+SNQ+AVD I+ IK+ AAA+ LI +A+S+KSKDDISCIVVKF
Sbjct: 234 DGIWKVLSNQEAVDAIKSIKDPHAAAKHLIEEAISRKSKDDISCIVVKF 282
>ref|NP_188144.1| protein phosphatase 2C (PP2C); protein id: At3g15260.1 [Arabidopsis
thaliana] gi|9294253|dbj|BAB02155.1| protein phosphatase
type 2C [Arabidopsis thaliana]
gi|26450048|dbj|BAC42144.1| putative protein phosphatase
type 2C [Arabidopsis thaliana]
Length = 289
Score = 68.2 bits (165), Expect = 5e-11
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = -1
Query: 515 DGIWKVMSNQKAVDFIRQIKNAQAAAERLI*KAVSKKSKDDISCIVVKFQ 366
DG+WKVMSNQ+AVD I+ IK+A+AAA+ L +AV++KS DDIS +VVKFQ
Sbjct: 240 DGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVARKSSDDISVVVVKFQ 289
>gb|AAM53328.1| putative protein phosphatase type 2C [Arabidopsis thaliana]
Length = 289
Score = 68.2 bits (165), Expect = 5e-11
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = -1
Query: 515 DGIWKVMSNQKAVDFIRQIKNAQAAAERLI*KAVSKKSKDDISCIVVKFQ 366
DG+WKVMSNQ+AVD I+ IK+A+AAA+ L +AV++KS DDIS +VVKFQ
Sbjct: 240 DGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVARKSSDDISVVVVKFQ 289
>pir||E84591 probable protein phosphatase 2C [imported] - Arabidopsis thaliana
Length = 290
Score = 66.6 bits (161), Expect = 2e-10
Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 11/61 (18%)
Frame = -1
Query: 515 DGIWKV-----------MSNQKAVDFIRQIKNAQAAAERLI*KAVSKKSKDDISCIVVKF 369
DG+WKV MSNQ+AVD I+ IK+ QAAA+ LI +AVSK+S DDISCIVV+F
Sbjct: 230 DGVWKVFEISSHVIIRVMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVVRF 289
Query: 368 Q 366
Q
Sbjct: 290 Q 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,332,610
Number of Sequences: 1393205
Number of extensions: 7056315
Number of successful extensions: 13550
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 13303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13542
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
