Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004752A_C01 KMC004752A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB90634.1| protein phosphatase 2C (PP2C) [Fagus sylvatica] 197 6e-50
ref|NP_195564.2| putative protein phosphatase-2c; protein id: At... 197 8e-50
gb|AAL32532.1| putative protein phosphatase-2c [Arabidopsis thal... 197 8e-50
pir||T05680 hypothetical protein F20M13.80 - Arabidopsis thalian... 197 8e-50
pir||T51100 protein phosphatase 2C homolog [imported] - common i... 184 4e-46
>emb|CAB90634.1| protein phosphatase 2C (PP2C) [Fagus sylvatica]
Length = 397
Score = 197 bits (501), Expect = 6e-50
Identities = 98/120 (81%), Positives = 105/120 (86%)
Frame = -3
Query: 524 HDQFIIFASDGLWEHFTNQDAVDIVQNHPHHGIAKRLVKMALQEAAKKREMRYSDLKKID 345
HDQF+IFASDGLWEH +NQ+AVDIVQNHP G +RL+K+ALQEAAKKREMRYSDLKKID
Sbjct: 278 HDQFVIFASDGLWEHLSNQEAVDIVQNHPRSGSVRRLIKVALQEAAKKREMRYSDLKKID 337
Query: 344 RGVRRHFHDDITVIVVFLDSNLVSRASSGKFTNISVRGAGINLPPNILAPCTTPTEAGST 165
RGVRRHFHDDITVIVVFLDSNLVSRASS K +ISVRG GINLP N LAP TT E GST
Sbjct: 338 RGVRRHFHDDITVIVVFLDSNLVSRASSVKCPSISVRGGGINLPHNTLAPYTTQMEVGST 397
>ref|NP_195564.2| putative protein phosphatase-2c; protein id: At4g38520.1, supported
by cDNA: gi_17064755 [Arabidopsis thaliana]
Length = 400
Score = 197 bits (500), Expect = 8e-50
Identities = 96/119 (80%), Positives = 106/119 (88%)
Frame = -3
Query: 524 HDQFIIFASDGLWEHFTNQDAVDIVQNHPHHGIAKRLVKMALQEAAKKREMRYSDLKKID 345
HDQFII ASDGLWEH +NQ+AVDIVQNHP +GIAKRLVK+ALQEAAKKREMRYSDLKKID
Sbjct: 278 HDQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKID 337
Query: 344 RGVRRHFHDDITVIVVFLDSNLVSRASSGKFTNISVRGAGINLPPNILAPCTTPTEAGS 168
RGVRRHFHDDITVIVVF D+NLVSR S + +SVRGAG+NLP N LAPCTTPT+A +
Sbjct: 338 RGVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAPCTTPTQAAA 396
>gb|AAL32532.1| putative protein phosphatase-2c [Arabidopsis thaliana]
Length = 400
Score = 197 bits (500), Expect = 8e-50
Identities = 96/119 (80%), Positives = 106/119 (88%)
Frame = -3
Query: 524 HDQFIIFASDGLWEHFTNQDAVDIVQNHPHHGIAKRLVKMALQEAAKKREMRYSDLKKID 345
HDQFII ASDGLWEH +NQ+AVDIVQNHP +GIAKRLVK+ALQEAAKKREMRYSDLKKID
Sbjct: 278 HDQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKID 337
Query: 344 RGVRRHFHDDITVIVVFLDSNLVSRASSGKFTNISVRGAGINLPPNILAPCTTPTEAGS 168
RGVRRHFHDDITVIVVF D+NLVSR S + +SVRGAG+NLP N LAPCTTPT+A +
Sbjct: 338 RGVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAPCTTPTQAAA 396
>pir||T05680 hypothetical protein F20M13.80 - Arabidopsis thaliana
gi|4467139|emb|CAB37508.1| putative protein
phosphatase-2c [Arabidopsis thaliana]
gi|7270835|emb|CAB80516.1| putative protein
phosphatase-2c [Arabidopsis thaliana]
Length = 395
Score = 197 bits (500), Expect = 8e-50
Identities = 96/119 (80%), Positives = 106/119 (88%)
Frame = -3
Query: 524 HDQFIIFASDGLWEHFTNQDAVDIVQNHPHHGIAKRLVKMALQEAAKKREMRYSDLKKID 345
HDQFII ASDGLWEH +NQ+AVDIVQNHP +GIAKRLVK+ALQEAAKKREMRYSDLKKID
Sbjct: 273 HDQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKID 332
Query: 344 RGVRRHFHDDITVIVVFLDSNLVSRASSGKFTNISVRGAGINLPPNILAPCTTPTEAGS 168
RGVRRHFHDDITVIVVF D+NLVSR S + +SVRGAG+NLP N LAPCTTPT+A +
Sbjct: 333 RGVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAPCTTPTQAAA 391
>pir||T51100 protein phosphatase 2C homolog [imported] - common ice plant
gi|4206122|gb|AAD11430.1| protein phosphatase 2C homolog
[Mesembryanthemum crystallinum]
Length = 396
Score = 184 bits (468), Expect = 4e-46
Identities = 89/120 (74%), Positives = 101/120 (84%)
Frame = -3
Query: 524 HDQFIIFASDGLWEHFTNQDAVDIVQNHPHHGIAKRLVKMALQEAAKKREMRYSDLKKID 345
HDQ IFASDGLWEH TNQ+AVD+VQ P +G AKRLVK+ALQEAAKKREMRYSDLKKID
Sbjct: 277 HDQVCIFASDGLWEHLTNQEAVDLVQKSPRNGSAKRLVKVALQEAAKKREMRYSDLKKID 336
Query: 344 RGVRRHFHDDITVIVVFLDSNLVSRASSGKFTNISVRGAGINLPPNILAPCTTPTEAGST 165
RGVRRHFHDDITV+VVFLDSNL+SR SS + +S+RG GI+LP LAPC TP E G++
Sbjct: 337 RGVRRHFHDDITVVVVFLDSNLISRGSSVRGPTLSLRGGGIHLPAKTLAPCATPMEVGNS 396
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,853,349
Number of Sequences: 1393205
Number of extensions: 10063753
Number of successful extensions: 29330
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 28412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29296
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
