Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004744A_C01 KMC004744A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16425.1| para-aminobenzoic acid synthetase [Plasmodium yoe... 35 0.79
ref|NP_113142.1| hypothetical protein [Guillardia theta] gi|2539... 33 2.3
ref|NP_390586.1| transcriptional regulator (NifA/NtrC family) [B... 32 6.7
>gb|EAA16425.1| para-aminobenzoic acid synthetase [Plasmodium yoelii yoelii]
Length = 956
Score = 34.7 bits (78), Expect = 0.79
Identities = 15/41 (36%), Positives = 26/41 (62%)
Frame = -3
Query: 143 KYINTKLFKQKLSYSFIFSIWRRTESARENDSSFFFPPFNK 21
KY+N KL K K +++ S + E+ + NDS++ + PF+K
Sbjct: 462 KYLNKKLEKYKNNFNINLSTFDINENIKNNDSNYSYSPFDK 502
>ref|NP_113142.1| hypothetical protein [Guillardia theta] gi|25396956|pir||F90127
hypothetical protein orf158 [imported] - Guillardia
theta nucleomorph gi|13794336|gb|AAK39713.1|AF083031_70
hypothetical protein [Guillardia theta]
Length = 158
Score = 33.1 bits (74), Expect = 2.3
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = -2
Query: 192 NVVSINFNISSY*LMEQVYKY*TF*TKIKLLLYFFNLAENRK 67
N+ NFNI+ Y + E YKY + + K +LYF+ L N K
Sbjct: 29 NLCFNNFNINEYFIDEYFYKYESIKKRQKAMLYFYKLILNYK 70
>ref|NP_390586.1| transcriptional regulator (NifA/NtrC family) [Bacillus subtilis]
gi|126223|sp|P23914|LEVR_BACSU Transcriptional
regulatory protein levR gi|98399|pir||A39160
transcription activator of levanase operon levR -
Bacillus subtilis gi|143150|gb|AAA22572.1| levR
gi|2108261|emb|CAA63460.1| transcriptional regulatory
protein [Bacillus subtilis] gi|2635154|emb|CAB14650.1|
transcriptional regulator (NifA/NtrC family) [Bacillus
subtilis subsp. subtilis str. 168]
Length = 938
Score = 31.6 bits (70), Expect = 6.7
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 324 LSAAFRSFRKNDVEIWERE*AR*GHRR-LLSSCLDGSG 214
L A ++S K+ +E+WER+ A G ++ L+S C GSG
Sbjct: 686 LHAIYQSVTKDFIELWERQPAASGKKKALVSICTTGSG 723
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,233,450
Number of Sequences: 1393205
Number of extensions: 8674982
Number of successful extensions: 15455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
