Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004743A_C01 KMC004743A_c01
(1047 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 (QM protein homol... 385 e-108
sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10 gi|6984130|gb|AAF... 383 e-107
gb|AAG27431.1| QM-like protein [Elaeis guineensis] 379 e-106
sp|P93847|RL10_SOLME 60S RIBOSOMAL PROTEIN L10 (EQM) gi|1902894|... 377 e-106
ref|NP_174013.1| putative 60s ribosomal protein L10; protein id:... 365 e-101
>sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 (QM protein homolog)
gi|5917743|gb|AAD56018.1|AF180758_1 60S ribosomal
protein L10 [Vitis riparia]
Length = 220
Score = 385 bits (989), Expect(2) = e-108
Identities = 184/203 (90%), Positives = 194/203 (94%)
Frame = -3
Query: 997 PKSRVCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSREKENVSSEALEAARIACNKYMA 818
PKSR CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVS EKENVSSEALEAARIACNKYM
Sbjct: 18 PKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMT 77
Query: 817 KLAGKDAFHLRVRVHPFHVLRINKMLACAGADRLQTGMRGAFGKPQGTCARVAIGQVLLS 638
K AGKDAFHLRVRVHPFHVLRINKML+CAGADRLQTGMRGAFGKPQGTCARV+IGQVLLS
Sbjct: 78 KYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLS 137
Query: 637 VRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRYKSENRILPDGVNA 458
VRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY+++KS+NRILPDGVNA
Sbjct: 138 VRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNA 197
Query: 457 KLLGCHGPLANRPPGRAFIDAAS 389
KLLGCHGPLANR PG+AFI+A +
Sbjct: 198 KLLGCHGPLANRQPGKAFINACT 220
Score = 30.0 bits (66), Expect(2) = e-108
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -1
Query: 1044 GKETGTCYRQIKNKPY 997
G+ CYRQIKNKPY
Sbjct: 2 GRRPARCYRQIKNKPY 17
>sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10 gi|6984130|gb|AAF34765.1|AF227620_1 60S
ribosomal protein L10 [Euphorbia esula]
Length = 220
Score = 383 bits (983), Expect(2) = e-107
Identities = 187/203 (92%), Positives = 192/203 (94%)
Frame = -3
Query: 997 PKSRVCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSREKENVSSEALEAARIACNKYMA 818
PKSR CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVS EKENVSSEALEAARIACNKYM
Sbjct: 18 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMT 77
Query: 817 KLAGKDAFHLRVRVHPFHVLRINKMLACAGADRLQTGMRGAFGKPQGTCARVAIGQVLLS 638
K AGKDAFHLRVRVHPFHVLRINKML+CAGADRLQTGMRGAFGKPQG CARVAIGQVLLS
Sbjct: 78 KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLS 137
Query: 637 VRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRYKSENRILPDGVNA 458
VRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRILPDGVNA
Sbjct: 138 VRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNA 197
Query: 457 KLLGCHGPLANRPPGRAFIDAAS 389
KLLGCHG LANR PGRAFIDA +
Sbjct: 198 KLLGCHGRLANRKPGRAFIDAVA 220
Score = 30.0 bits (66), Expect(2) = e-107
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -1
Query: 1044 GKETGTCYRQIKNKPY 997
G+ CYRQIKNKPY
Sbjct: 2 GRRPARCYRQIKNKPY 17
>gb|AAG27431.1| QM-like protein [Elaeis guineensis]
Length = 224
Score = 379 bits (973), Expect(2) = e-106
Identities = 184/206 (89%), Positives = 192/206 (92%)
Frame = -3
Query: 997 PKSRVCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSREKENVSSEALEAARIACNKYMA 818
PKSR CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVS EKENVSSEALEAARIACNKYMA
Sbjct: 18 PKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMA 77
Query: 817 KLAGKDAFHLRVRVHPFHVLRINKMLACAGADRLQTGMRGAFGKPQGTCARVAIGQVLLS 638
K AGKDAFHLRVRVHPFHVLRINKML+CAGADRLQTGMRGAFGKPQGTCARV IGQVLLS
Sbjct: 78 KYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVMIGQVLLS 137
Query: 637 VRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRYKSENRILPDGVNA 458
VRCKD NS+HAQEALRRAKFKFPGRQKII+SRKWGFTKF+R DYLR+KSENRI+PDGVNA
Sbjct: 138 VRCKDGNSNHAQEALRRAKFKFPGRQKIIISRKWGFTKFNRTDYLRWKSENRIVPDGVNA 197
Query: 457 KLLGCHGPLANRPPGRAFIDAASATA 380
KLLGCHG L+ R PGRAF+ A A
Sbjct: 198 KLLGCHGRLSARQPGRAFLPPTIANA 223
Score = 30.0 bits (66), Expect(2) = e-106
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -1
Query: 1044 GKETGTCYRQIKNKPY 997
G+ CYRQIKNKPY
Sbjct: 2 GRRPARCYRQIKNKPY 17
>sp|P93847|RL10_SOLME 60S RIBOSOMAL PROTEIN L10 (EQM) gi|1902894|dbj|BAA19462.1| QM
family protein [Solanum melongena]
Length = 219
Score = 377 bits (969), Expect(2) = e-106
Identities = 183/202 (90%), Positives = 191/202 (93%)
Frame = -3
Query: 997 PKSRVCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSREKENVSSEALEAARIACNKYMA 818
PKSR CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVS EKENVSSEALEAARIACNKYM
Sbjct: 18 PKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMT 77
Query: 817 KLAGKDAFHLRVRVHPFHVLRINKMLACAGADRLQTGMRGAFGKPQGTCARVAIGQVLLS 638
K AGKDAFHLRVRVHPFHVLRINKML+CAGADRLQTGMRGAFGKPQG CARVAIGQVLLS
Sbjct: 78 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLS 137
Query: 637 VRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRYKSENRILPDGVNA 458
VRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL+YKSENRI+PDGVNA
Sbjct: 138 VRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNA 197
Query: 457 KLLGCHGPLANRPPGRAFIDAA 392
KLLG HGPLA R PGRAF+ ++
Sbjct: 198 KLLGNHGPLAARQPGRAFLSSS 219
Score = 30.0 bits (66), Expect(2) = e-106
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -1
Query: 1044 GKETGTCYRQIKNKPY 997
G+ CYRQIKNKPY
Sbjct: 2 GRRPARCYRQIKNKPY 17
>ref|NP_174013.1| putative 60s ribosomal protein L10; protein id: At1g26910.1,
supported by cDNA: 33391. [Arabidopsis thaliana]
gi|19884272|sp|Q08770|RL10_ARATH 60S ribosomal protein
L10 (Wilm's tumor suppressor protein homolog)
gi|25313180|pir||A86396 60s ribosomal protein L10
[imported] - Arabidopsis thaliana
gi|4262180|gb|AAD14497.1| 29621
gi|21592869|gb|AAM64819.1| putative 60s ribosomal
protein L10 [Arabidopsis thaliana]
Length = 221
Score = 365 bits (936), Expect(2) = e-101
Identities = 174/203 (85%), Positives = 186/203 (90%)
Frame = -3
Query: 997 PKSRVCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSREKENVSSEALEAARIACNKYMA 818
PKSR CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVS EKENVSSEALEAARIACNKYM
Sbjct: 18 PKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMV 77
Query: 817 KLAGKDAFHLRVRVHPFHVLRINKMLACAGADRLQTGMRGAFGKPQGTCARVAIGQVLLS 638
K AGKDAFHLR+RVHPFHVLRINKML+CAGADRLQTGMRGAFGK GTCARVAIGQVLLS
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 637 VRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRYKSENRILPDGVNA 458
VRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RI+PDGVNA
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNA 197
Query: 457 KLLGCHGPLANRPPGRAFIDAAS 389
K L CHGPLANR PG AF+ A +
Sbjct: 198 KFLSCHGPLANRQPGSAFLSAGA 220
Score = 27.7 bits (60), Expect(2) = e-101
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 1044 GKETGTCYRQIKNKPY 997
G+ CYRQIK KPY
Sbjct: 2 GRRPARCYRQIKGKPY 17
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 911,773,455
Number of Sequences: 1393205
Number of extensions: 20888629
Number of successful extensions: 47364
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 44970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47192
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61808729248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
