Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004741A_C01 KMC004741A_c01
(448 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_619756.1| replicase [Physalis mottle virus] gi|3378685|em... 31 3.0
ref|NP_194419.1| putative NPK1-related protein kinase; protein i... 31 3.9
ref|NP_704610.1| hypothetical protein [Plasmodium falciparum 3D7... 30 5.1
gb|EAA22452.1| asparagine-rich protein, putative [Plasmodium yoe... 30 6.7
ref|NP_697445.1| 4-hydroxybenzoate octaprenyltransferase [Brucel... 30 8.8
>ref|NP_619756.1| replicase [Physalis mottle virus] gi|3378685|emb|CAA76071.1|
replicase protein [Physalis mottle virus]
Length = 1932
Score = 31.2 bits (69), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 308 ERPISLTSNYPIKCNYIPFLH 370
+RPI LTS +PI Y+P LH
Sbjct: 1312 QRPIDLTSTFPIDLPYLPLLH 1332
>ref|NP_194419.1| putative NPK1-related protein kinase; protein id: At4g26890.1
[Arabidopsis thaliana] gi|7487975|pir||T04812
NPK1-related protein kinase homolog F10M23.230 -
Arabidopsis thaliana gi|4455212|emb|CAB36535.1| putative
NPK1-related protein kinase [Arabidopsis thaliana]
gi|7269542|emb|CAB79544.1| putative NPK1-related protein
kinase [Arabidopsis thaliana]
Length = 444
Score = 30.8 bits (68), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 312 DQFPLQVTIQSNVITYHFCTNKTRITSIFNFLLVSCRH 425
+ F V IQ N+I +H+CT++ SI N + +H
Sbjct: 392 NNFYSNVAIQGNLIAFHYCTDEGENVSIKNMFRTNNKH 429
>ref|NP_704610.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504970|emb|CAD51753.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 363
Score = 30.4 bits (67), Expect = 5.1
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 194 DAIVNYPNRVYKLKNQILT*QNMYAEKEA---N*IAFLN*NERPISLTSNYPIKCNYIPF 364
D+I N ++Y + N+YA E N FL+ +E ++ +Y +K NYI +
Sbjct: 129 DSIKNIKKKIYTHTGTLYDNMNLYAYDENDVDNTQVFLSNDEYCLN---DYNVKDNYIIY 185
Query: 365 LHQQNKNY 388
+ ++NK Y
Sbjct: 186 IQEKNKTY 193
>gb|EAA22452.1| asparagine-rich protein, putative [Plasmodium yoelii yoelii]
Length = 1104
Score = 30.0 bits (66), Expect = 6.7
Identities = 19/56 (33%), Positives = 27/56 (47%)
Frame = +2
Query: 227 KLKNQILT*QNMYAEKEAN*IAFLN*NERPISLTSNYPIKCNYIPFLHQQNKNYIN 394
K N IL N +K N I N + +LT N P N + F+H+ K++IN
Sbjct: 437 KKNNNILKKNNNILKKNKN-ILKKRLNNKTYTLTLNIPSTRNNLKFVHKNGKSWIN 491
>ref|NP_697445.1| 4-hydroxybenzoate octaprenyltransferase [Brucella suis 1330]
gi|23347208|gb|AAN29360.1|AE014352_6 4-hydroxybenzoate
octaprenyltransferase [Brucella suis 1330]
Length = 333
Score = 29.6 bits (65), Expect = 8.8
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = -1
Query: 418 QDTRRKLKIDVILVLLVQKWYVITFDWIVTCKGNWSLILV 299
Q TR++ K+ V+L LV V+ F+W G +SL++V
Sbjct: 127 QVTRKQAKLFVVLQALVGLAVVLQFNWFSVALGIFSLLIV 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,136,038
Number of Sequences: 1393205
Number of extensions: 6281775
Number of successful extensions: 10931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10929
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
