Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004739A_C01 KMC004739A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177174.1| matrix metalloproteinase, putative; protein id:... 145 5e-34
ref|NP_173824.1| putative metalloproteinase; protein id: At1g241... 140 1e-32
ref|NP_182030.1| putative metalloproteinase; protein id: At2g450... 129 2e-29
pir||T51957 metalloproteinase (EC 3.4.24.-) [imported] - Arabido... 129 2e-29
ref|NP_176205.1| metalloproteinase, putative; protein id: At1g59... 126 3e-28
>ref|NP_177174.1| matrix metalloproteinase, putative; protein id: At1g70170.1
[Arabidopsis thaliana] gi|25406033|pir||E96724
hypothetical protein F20P5.11 [imported] - Arabidopsis
thaliana gi|2194124|gb|AAB61099.1| Similar to Glycine
metalloendoproteinase (gb|U63725). [Arabidopsis
thaliana]
Length = 378
Score = 145 bits (365), Expect = 5e-34
Identities = 70/110 (63%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Frame = -2
Query: 620 AHAFSPTNGRFHLDAAEDWVVSGDV-SKSALATAVDLESVAVHEIGHLLGLGHSSVEEAI 444
AHAFSP +G+FHLDA E+WVVSGD+ S ++ AVDLESVAVHEIGHLLGLGHSSVEE+I
Sbjct: 238 AHAFSPPSGKFHLDADENWVVSGDLDSFLSVTAAVDLESVAVHEIGHLLGLGHSSVEESI 297
Query: 443 MFPTISSRTKKVVLAEDDIKGIQYLYGTNPSFNGSSATTSSPERDASDGG 294
M+PTI++ +KV L DD++GIQYLYG NP+FNG+++ S+ + GG
Sbjct: 298 MYPTITTGKRKVDLTNDDVEGIQYLYGANPNFNGTTSPPSTTKHQRDTGG 347
>ref|NP_173824.1| putative metalloproteinase; protein id: At1g24140.1 [Arabidopsis
thaliana] gi|7488435|pir||T00643 zinc metalloproteinase
homolog F3I6.6 - Arabidopsis thaliana
gi|2829864|gb|AAC00572.1| similar to zinc
metalloproteinases [Arabidopsis thaliana]
Length = 377
Score = 140 bits (353), Expect = 1e-32
Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 12/147 (8%)
Frame = -2
Query: 620 AHAFSPTNGRFHLDAAEDWVVSGDVSKS--ALATAVDLESVAVHEIGHLLGLGHSSVEEA 447
AHAFSP G FHLD E+W+VSG+ +++ AVDLESVAVHEIGHLLGLGHSSVE +
Sbjct: 235 AHAFSPPTGHFHLDGEENWIVSGEGGDGFISVSEAVDLESVAVHEIGHLLGLGHSSVEGS 294
Query: 446 IMFPTISSRTKKVVLAEDDIKGIQYLYGTNPSFNGS-SATTSSPERDASDGGRR------ 288
IM+PTI + +KV L DD++G+QYLYG NP+FNGS S S+ +RD D G
Sbjct: 295 IMYPTIRTGRRKVDLTTDDVEGVQYLYGANPNFNGSRSPPPSTQQRDTGDSGAPGRSDGS 354
Query: 287 ---LSCFLASPWWVLFSLLTSAFLHLV 216
L+ L +W++F L FL+LV
Sbjct: 355 RSVLTNLLQYYFWIIFGL----FLYLV 377
>ref|NP_182030.1| putative metalloproteinase; protein id: At2g45040.1, supported by
cDNA: gi_3128476 [Arabidopsis thaliana]
gi|25408919|pir||G84885 probable metalloproteinase
[imported] - Arabidopsis thaliana
gi|26452204|dbj|BAC43190.1| putative metalloproteinase
[Arabidopsis thaliana]
Length = 342
Score = 129 bits (325), Expect = 2e-29
Identities = 65/110 (59%), Positives = 79/110 (71%)
Frame = -2
Query: 620 AHAFSPTNGRFHLDAAEDWVVSGDVSKSALATAVDLESVAVHEIGHLLGLGHSSVEEAIM 441
AH FSP NGR HLD AE W V D KS++A VDLESVAVHEIGH+LGLGHSSV++A M
Sbjct: 213 AHTFSPENGRLHLDKAETWAVDFDEEKSSVA--VDLESVAVHEIGHVLGLGHSSVKDAAM 270
Query: 440 FPTISSRTKKVVLAEDDIKGIQYLYGTNPSFNGSSATTSSPERDASDGGR 291
+PT+ R+KKV L DD+ G+Q LYGTNP+F +S S + +DG R
Sbjct: 271 YPTLKPRSKKVNLNMDDVVGVQSLYGTNPNFTLNSLLASETSTNLADGSR 320
>pir||T51957 metalloproteinase (EC 3.4.24.-) [imported] - Arabidopsis thaliana
gi|3128477|gb|AAC31167.1| metalloproteinase [Arabidopsis
thaliana]
Length = 341
Score = 129 bits (325), Expect = 2e-29
Identities = 65/110 (59%), Positives = 79/110 (71%)
Frame = -2
Query: 620 AHAFSPTNGRFHLDAAEDWVVSGDVSKSALATAVDLESVAVHEIGHLLGLGHSSVEEAIM 441
AH FSP NGR HLD AE W V D KS++A VDLESVAVHEIGH+LGLGHSSV++A M
Sbjct: 212 AHTFSPENGRLHLDKAETWAVDFDEEKSSVA--VDLESVAVHEIGHVLGLGHSSVKDAAM 269
Query: 440 FPTISSRTKKVVLAEDDIKGIQYLYGTNPSFNGSSATTSSPERDASDGGR 291
+PT+ R+KKV L DD+ G+Q LYGTNP+F +S S + +DG R
Sbjct: 270 YPTLKPRSKKVNLNMDDVVGVQSLYGTNPNFTLNSLLASETSTNLADGSR 319
>ref|NP_176205.1| metalloproteinase, putative; protein id: At1g59970.1 [Arabidopsis
thaliana] gi|4249376|gb|AAD14473.1|AAD14473 Strong
similarity to gi|2829864 F3I6.6 zinc metalloproteinase
homolog from Arabidopsis thaliana BAC gb|AC002396. EST
gb|Z26412 comes from this gene
Length = 360
Score = 126 bits (316), Expect = 3e-28
Identities = 67/112 (59%), Positives = 81/112 (71%), Gaps = 3/112 (2%)
Frame = -2
Query: 620 AHAFSPTNGRFHLDAAEDWVVS-GDVSKSAL--ATAVDLESVAVHEIGHLLGLGHSSVEE 450
AHA SP G HLD EDW++S G++S+ L T VDLESVAVHEIGHLLGLGHSSVE+
Sbjct: 226 AHASSPPTGMLHLDGDEDWLISNGEISRRILPVTTVVDLESVAVHEIGHLLGLGHSSVED 285
Query: 449 AIMFPTISSRTKKVVLAEDDIKGIQYLYGTNPSFNGSSATTSSPERDASDGG 294
AIMFP IS +KV LA+DDI+GIQ+LYG NP+ +G S P R++ G
Sbjct: 286 AIMFPAISGGDRKVELAKDDIEGIQHLYGGNPNGDGGG---SKPSRESQSTG 334
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,272,319
Number of Sequences: 1393205
Number of extensions: 15206544
Number of successful extensions: 79910
Number of sequences better than 10.0: 1090
Number of HSP's better than 10.0 without gapping: 60268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75524
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
