Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004734A_C01 KMC004734A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199226.1| fasciclin-like arabinogalactan-protein, putativ... 130 2e-29
ref|NP_565475.1| fasciclin-like arabinogalactan-protein (FLA6); ... 126 2e-28
pir||C84590 probable surface protein [imported] - Arabidopsis th... 126 2e-28
ref|NP_563692.1| fasciclin-like arabinogalactan-protein (FLA9); ... 122 3e-27
gb|AAN60339.1| unknown [Arabidopsis thaliana] 122 3e-27
>ref|NP_199226.1| fasciclin-like arabinogalactan-protein, putative (FLA13); protein
id: At5g44130.1, supported by cDNA: gi_16648846,
supported by cDNA: gi_20466118 [Arabidopsis thaliana]
gi|9759514|dbj|BAB10980.1| contains similarity to
surface protein~gene_id:MLN1.5 [Arabidopsis thaliana]
gi|16648847|gb|AAL25613.1| AT5g44130/MLN1_5 [Arabidopsis
thaliana] gi|20466119|gb|AAM19981.1| AT5g44130/MLN1_5
[Arabidopsis thaliana] gi|24417316|gb|AAN60268.1|
unknown [Arabidopsis thaliana]
Length = 247
Score = 130 bits (326), Expect = 2e-29
Identities = 75/138 (54%), Positives = 94/138 (67%), Gaps = 3/138 (2%)
Frame = -1
Query: 598 PKYYSLSDLQTVSNPVRTQASEKE--GSWGLNFKGQGNQVNVTTGVVTTSINNDLRQQFP 425
PK+Y+L DL +VSNPVRTQAS ++ G +GLNF GQGNQVNV+TGVV T ++ LRQ+ P
Sbjct: 110 PKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERP 169
Query: 424 LAIYQVDRVLLPLELFGAKSPS-SAPSPKSSETTPSDETPSSGKKGGAPSPAASQKDNGV 248
LA+Y VD VLLP E+FG + S AP PKS SD++ SS KK APS + +G
Sbjct: 170 LAVYVVDMVLLPEEMFGERKISPMAPPPKSKSPDVSDDSESS-KKAAAPS---ESEKSGS 225
Query: 247 AGRNVGLGLVLGLGFICM 194
N GLGL LGL +C+
Sbjct: 226 GEMNTGLGLGLGLVVLCL 243
>ref|NP_565475.1| fasciclin-like arabinogalactan-protein (FLA6); protein id:
At2g20520.1, supported by cDNA: gi_13377779 [Arabidopsis
thaliana] gi|13377780|gb|AAK20859.1|AF333972_1
fasciclin-like arabinogalactan-protein 6 [Arabidopsis
thaliana] gi|20198085|gb|AAD25652.2| putative surface
protein [Arabidopsis thaliana]
Length = 247
Score = 126 bits (316), Expect = 2e-28
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Frame = -1
Query: 598 PKYYSLSDLQTVSNPVRTQASEKEGS-WGLNFKGQG--NQVNVTTGVVTTSINNDLRQQF 428
PKYYSLSDL SNPVRTQA+ ++G +GLNF GQ NQVNV+TGVV T INN LRQQF
Sbjct: 112 PKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQF 171
Query: 427 PLAIYQVDRVLLPLELFGAK-SPSSAPSPKSSETTPSDETPSSGKKGGAPSPAA--SQKD 257
PLA+Y VD VLLP ELFG K +P+ AP+PKSS T+ SD A SPAA K
Sbjct: 172 PLAVYVVDSVLLPEELFGTKTTPTGAPAPKSS-TSSSD----------ADSPAADDEHKS 220
Query: 256 NGVAGRNVGLGLVLGLGFICMGAL 185
G + + LG+V+ C +
Sbjct: 221 AGSSVKRTSLGIVVSFALFCCSVI 244
>pir||C84590 probable surface protein [imported] - Arabidopsis thaliana
Length = 240
Score = 126 bits (316), Expect = 2e-28
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Frame = -1
Query: 598 PKYYSLSDLQTVSNPVRTQASEKEGS-WGLNFKGQG--NQVNVTTGVVTTSINNDLRQQF 428
PKYYSLSDL SNPVRTQA+ ++G +GLNF GQ NQVNV+TGVV T INN LRQQF
Sbjct: 105 PKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQF 164
Query: 427 PLAIYQVDRVLLPLELFGAK-SPSSAPSPKSSETTPSDETPSSGKKGGAPSPAA--SQKD 257
PLA+Y VD VLLP ELFG K +P+ AP+PKSS T+ SD A SPAA K
Sbjct: 165 PLAVYVVDSVLLPEELFGTKTTPTGAPAPKSS-TSSSD----------ADSPAADDEHKS 213
Query: 256 NGVAGRNVGLGLVLGLGFICMGAL 185
G + + LG+V+ C +
Sbjct: 214 AGSSVKRTSLGIVVSFALFCCSVI 237
>ref|NP_563692.1| fasciclin-like arabinogalactan-protein (FLA9); protein id:
At1g03870.1, supported by cDNA: 39763., supported by
cDNA: gi_13377783 [Arabidopsis thaliana]
gi|25350180|pir||D86169 hypothetical protein [imported]
- Arabidopsis thaliana gi|4204300|gb|AAD10681.1| Unknown
protein [Arabidopsis thaliana]
gi|13377784|gb|AAK20861.1|AF333974_1 fasciclin-like
arabinogalactan-protein 9 [Arabidopsis thaliana]
gi|21593519|gb|AAM65486.1| putative surface protein
[Arabidopsis thaliana]
Length = 247
Score = 122 bits (307), Expect = 3e-27
Identities = 72/137 (52%), Positives = 92/137 (66%), Gaps = 2/137 (1%)
Frame = -1
Query: 598 PKYYSLSDLQTVSNPVRTQASEKE-GSWGLNFKGQGNQVNVTTGVVTTSINNDLRQQFPL 422
PKYYS+ DL +VSNPVRTQAS ++ G +GLNF GQ NQ+NV+TG V T I+N LRQQ PL
Sbjct: 113 PKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPL 172
Query: 421 AIYQVDRVLLPLELFGA-KSPSSAPSPKSSETTPSDETPSSGKKGGAPSPAASQKDNGVA 245
A+Y VD VLLP E+FG K AP+PKS +D++ S+ KK +PS +G
Sbjct: 173 AVYVVDMVLLPGEMFGEHKLSPIAPAPKSKSGGVTDDSGST-KKAASPS-----DKSGSG 226
Query: 244 GRNVGLGLVLGLGFICM 194
+ VGLG LGL +C+
Sbjct: 227 EKKVGLGFGLGLIVLCL 243
>gb|AAN60339.1| unknown [Arabidopsis thaliana]
Length = 247
Score = 122 bits (307), Expect = 3e-27
Identities = 72/137 (52%), Positives = 92/137 (66%), Gaps = 2/137 (1%)
Frame = -1
Query: 598 PKYYSLSDLQTVSNPVRTQASEKE-GSWGLNFKGQGNQVNVTTGVVTTSINNDLRQQFPL 422
PKYYS+ DL +VSNPVRTQAS ++ G +GLNF GQ NQ+NV+TG V T I+N LRQQ PL
Sbjct: 113 PKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPL 172
Query: 421 AIYQVDRVLLPLELFGA-KSPSSAPSPKSSETTPSDETPSSGKKGGAPSPAASQKDNGVA 245
A+Y VD VLLP E+FG K AP+PKS +D++ S+ KK +PS +G
Sbjct: 173 AVYVVDMVLLPGEMFGEHKLSPIAPAPKSKSGGVTDDSGST-KKAASPS-----DKSGSG 226
Query: 244 GRNVGLGLVLGLGFICM 194
+ VGLG LGL +C+
Sbjct: 227 EKKVGLGFGLGLIVLCL 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,051,108
Number of Sequences: 1393205
Number of extensions: 14425064
Number of successful extensions: 69314
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 58369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68523
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
