Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004725A_C01 KMC004725A_c01
(935 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08438.1| gene_id:MJC20.15~similar to unknown protein~sp|P... 304 1e-81
ref|NP_568600.1| putative protein; protein id: At5g42050.1, supp... 304 1e-81
sp|P37707|B2_DAUCA B2 PROTEIN gi|322726|pir||S32124 B2 protein -... 303 3e-81
emb|CAD37200.1| GDA2 protein [Pisum sativum] 290 3e-77
emb|CAA04664.1| hypothetical protein [Citrus x paradisi] 286 3e-76
>dbj|BAB08438.1| gene_id:MJC20.15~similar to unknown protein~sp|P37707 [Arabidopsis
thaliana]
Length = 204
Score = 304 bits (779), Expect = 1e-81
Identities = 150/201 (74%), Positives = 166/201 (81%)
Frame = -1
Query: 935 LKGNNKVGGEDEFLFSHPHKNFKKNTNPNKKQGESNNNNNNNDSNNKSKDAKKFKTLPAS 756
LK NNK G DE +K N+K ++NNN N D N D K+FKTLP +
Sbjct: 10 LKNNNKNKGIDE------DHQIQKGGKKNRKNQQNNNNQRNEDDKNNGLD-KRFKTLPPA 62
Query: 755 ESLPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLH 576
E+LPRNETIGGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLH
Sbjct: 63 EALPRNETIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLH 122
Query: 575 GIFEAASFGGTNIDPSAWEDKKCPGESRFPAQVQVLTRKVCEPLEEDSFRPILHHYDGPK 396
GI+EAASFGGTNI+ +A+EDKKCPGESRFPAQV+ +TRKVC PLEEDSFRPILHHYDGPK
Sbjct: 123 GIYEAASFGGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDSFRPILHHYDGPK 182
Query: 395 FRLELNVPEALSLLDIFAEQD 333
FRLEL+VPE LSLLDIFA+Q+
Sbjct: 183 FRLELSVPEVLSLLDIFADQN 203
>ref|NP_568600.1| putative protein; protein id: At5g42050.1, supported by cDNA:
6903., supported by cDNA: gi_19424060, supported by
cDNA: gi_21281017 [Arabidopsis thaliana]
gi|19424061|gb|AAL87257.1| unknown protein [Arabidopsis
thaliana] gi|21281018|gb|AAM45105.1| unknown protein
[Arabidopsis thaliana] gi|21594375|gb|AAM66001.1|
unknown [Arabidopsis thaliana]
Length = 349
Score = 304 bits (779), Expect = 1e-81
Identities = 150/201 (74%), Positives = 166/201 (81%)
Frame = -1
Query: 935 LKGNNKVGGEDEFLFSHPHKNFKKNTNPNKKQGESNNNNNNNDSNNKSKDAKKFKTLPAS 756
LK NNK G DE +K N+K ++NNN N D N D K+FKTLP +
Sbjct: 155 LKNNNKNKGIDE------DHQIQKGGKKNRKNQQNNNNQRNEDDKNNGLD-KRFKTLPPA 207
Query: 755 ESLPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLH 576
E+LPRNETIGGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLH
Sbjct: 208 EALPRNETIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLH 267
Query: 575 GIFEAASFGGTNIDPSAWEDKKCPGESRFPAQVQVLTRKVCEPLEEDSFRPILHHYDGPK 396
GI+EAASFGGTNI+ +A+EDKKCPGESRFPAQV+ +TRKVC PLEEDSFRPILHHYDGPK
Sbjct: 268 GIYEAASFGGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDSFRPILHHYDGPK 327
Query: 395 FRLELNVPEALSLLDIFAEQD 333
FRLEL+VPE LSLLDIFA+Q+
Sbjct: 328 FRLELSVPEVLSLLDIFADQN 348
>sp|P37707|B2_DAUCA B2 PROTEIN gi|322726|pir||S32124 B2 protein - carrot
gi|297889|emb|CAA51078.1| B2 protein [Daucus carota]
Length = 207
Score = 303 bits (775), Expect = 3e-81
Identities = 147/184 (79%), Positives = 159/184 (85%), Gaps = 4/184 (2%)
Frame = -1
Query: 878 KNFKKNTNPNKKQGESNNNN----NNNDSNNKSKDAKKFKTLPASESLPRNETIGGYIFV 711
K+ KKN N N NNNN N N NK+ K+FKTLP +ESLPRNET+GGYIFV
Sbjct: 27 KSVKKNKNKN------NNNNSESGNKNGGENKNGVEKRFKTLPPAESLPRNETVGGYIFV 80
Query: 710 CNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDP 531
CNNDTM ENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHG+FEAASFGGTNIDP
Sbjct: 81 CNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDP 140
Query: 530 SAWEDKKCPGESRFPAQVQVLTRKVCEPLEEDSFRPILHHYDGPKFRLELNVPEALSLLD 351
+AWEDKK GESRFPAQV+V+TRK+CEPLEEDSFRPILHHYDGPKFRLELN+PEA+SLLD
Sbjct: 141 TAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLD 200
Query: 350 IFAE 339
IF E
Sbjct: 201 IFEE 204
>emb|CAD37200.1| GDA2 protein [Pisum sativum]
Length = 213
Score = 290 bits (741), Expect = 3e-77
Identities = 136/191 (71%), Positives = 158/191 (82%), Gaps = 8/191 (4%)
Frame = -1
Query: 896 LFSHPHKNFKKNTNPNKKQGE--------SNNNNNNNDSNNKSKDAKKFKTLPASESLPR 741
++ + NF N N NK G SNNNNNNN++N + D K+FKTLPA+E+LPR
Sbjct: 16 VYQKSNANFVGNMNSNKYSGNVQLNKDPHSNNNNNNNENNTNATD-KRFKTLPAAETLPR 74
Query: 740 NETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEA 561
NE +GGYIFVCNNDTM E+LKRQLFGLPPRYRDSVRAITPGLPLFLYNY+THQLHGIFEA
Sbjct: 75 NEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEA 134
Query: 560 ASFGGTNIDPSAWEDKKCPGESRFPAQVQVLTRKVCEPLEEDSFRPILHHYDGPKFRLEL 381
FGG+NIDP+AWEDKKC GESRFPAQV++ RK+C+ LEEDSFRP+LHHYDGPKFRLEL
Sbjct: 135 TCFGGSNIDPTAWEDKKCKGESRFPAQVRIRVRKICKALEEDSFRPVLHHYDGPKFRLEL 194
Query: 380 NVPEALSLLDI 348
+VPE L L+D+
Sbjct: 195 SVPETLDLMDL 205
>emb|CAA04664.1| hypothetical protein [Citrus x paradisi]
Length = 305
Score = 286 bits (732), Expect = 3e-76
Identities = 130/172 (75%), Positives = 151/172 (87%)
Frame = -1
Query: 863 NTNPNKKQGESNNNNNNNDSNNKSKDAKKFKTLPASESLPRNETIGGYIFVCNNDTMAEN 684
N + + + +NNNNNNNDSN S K+FKTLPA+E+LPRNE +GGYIFVCNNDTM E+
Sbjct: 126 NLSVKEAENNNNNNNNNNDSNANSALDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQED 185
Query: 683 LKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPSAWEDKKCP 504
LKRQLFGLPPRYRDSVRAITPGLPLFLYNY+THQLHGIFEA FGG+NIDP+AWEDKKC
Sbjct: 186 LKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEATGFGGSNIDPTAWEDKKCK 245
Query: 503 GESRFPAQVQVLTRKVCEPLEEDSFRPILHHYDGPKFRLELNVPEALSLLDI 348
GESRFPAQV++ RK+C+ LEED+FRP+LHHYDGPKFRLEL+VPE L L+D+
Sbjct: 246 GESRFPAQVRIRVRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDL 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 851,379,022
Number of Sequences: 1393205
Number of extensions: 20786581
Number of successful extensions: 324188
Number of sequences better than 10.0: 2110
Number of HSP's better than 10.0 without gapping: 81352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184595
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52137106016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
